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Yusuf Hamied Department of Chemistry

 

Publications by Professor Sir Shankar Balasubramanian FMedSci FRS

Base resolution maps reveal the importance of 5-hydroxymethylcytosine in a human glioblastoma
EA Raiber, D Beraldi, S Martinez Cuesta, GR McInroy, Z Kingsbury, J Becq, T James, M Lopes, K Allinson, S Field, S Humphray, T Santarius, C Watts, D Bentley, S Balasubramanian
– Genomic Medicine
(2017)
2,
6
(DOI: 10.1038/s41525-017-0007-6)
Identification of small molecule inhibitors of the Lin28-mediated blockage of pre-let-7g processing
HL Lightfoot, EA Miska, S Balasubramanian
– Organic & biomolecular chemistry
(2016)
14,
10208
(DOI: 10.1039/c6ob01945e)
Retinol and ascorbate drive erasure of epigenetic memory and enhance reprogramming to naïve pluripotency by complementary mechanisms.
TA Hore, F von Meyenn, M Ravichandran, M Bachman, G Ficz, D Oxley, F Santos, S Balasubramanian, TP Jurkowski, W Reik
– Proceedings of the National Academy of Sciences
(2016)
113,
12202
(DOI: 10.1073/pnas.1608679113)
G-quadruplex structures mark human regulatory chromatin.
R Hänsel-Hertsch, D Beraldi, SV Lensing, G Marsico, K Zyner, A Parry, M Di Antonio, J Pike, H Kimura, M Narita, D Tannahill, S Balasubramanian
– Nature genetics
(2016)
48,
1267
(DOI: 10.1038/ng.3662)
An Epigenetics‐Inspired DNA‐Based Data Storage System
C Mayer, GR McInroy, P Murat, P Van Delft, S Balasubramanian
– Angewandte Chemie International Edition
(2016)
55,
11144
(DOI: 10.1002/anie.201605531)
RG4-seq reveals widespread formation of G-quadruplex structures in the human transcriptome
CK Kwok, G Marsico, AB Sahakyan, VS Chambers, S Balasubramanian
– Nature Methods
(2016)
13,
841
(DOI: 10.1038/nmeth.3965)
DSBCapture: <i>in situ</i> capture and sequencing of DNA breaks
SV Lensing, G Marsico, R Hänsel-Hertsch, EY Lam, D Tannahill, S Balasubramanian
– Nature Methods
(2016)
13,
855
(DOI: 10.1038/nmeth.3960)
Structural Analysis using SHALiPE to Reveal RNA G-Quadruplex Formation in Human Precursor MicroRNA
CK Kwok, AB Sahakyan, S Balasubramanian
– Angew Chem Int Ed Engl
(2016)
55,
8958
(DOI: 10.1002/anie.201603562)
Structural Analysis using SHALiPE to Reveal RNA G‐Quadruplex Formation in Human Precursor MicroRNA
CK Kwok, AB Sahakyan, S Balasubramanian
– Angewandte Chemie
(2016)
128,
9104
(DOI: 10.1002/ange.201603562)
In vivo genome-wide profiling reveals a tissue-specific role for 5-formylcytosine.
M Iurlaro, GR McInroy, HE Burgess, W Dean, E-A Raiber, M Bachman, D Beraldi, S Balasubramanian, W Reik
– Genome Biology
(2016)
17,
141
(DOI: 10.1186/s13059-016-1001-5)
Long genes and genes with multiple splice variants are enriched in pathways linked to cancer and other multigenic diseases.
AB Sahakyan, S Balasubramanian
– BMC genomics
(2016)
17,
225
(DOI: 10.1186/s12864-016-2582-9)
Selective inhibitors of trypanosomal uridylyl transferase RET1 establish druggability of RNA post-transcriptional modifications.
A Cording, M Gormally, PJ Bond, M Carrington, S Balasubramanian, EA Miska, B Thomas
– RNA Biology
(2016)
14,
611
(DOI: 10.1080/15476286.2015.1137422)
Photoactivation of Mutant Isocitrate Dehydrogenase 2 Reveals Rapid Cancer-Associated Metabolic and Epigenetic Changes
OS Walker, SJ Elsässer, M Mahesh, M Bachman, S Balasubramanian, JW Chin
– Journal of the American Chemical Society
(2016)
138,
718
(DOI: 10.1021/jacs.5b07627)
Enhanced methylation analysis by recovery of unsequenceable fragments
GR McInroy, D Beraldi, E-A Raiber, K Modrzynska, P van Delft, O Billker, S Balasubramanian
– PLoS One
(2016)
11,
e0152322
(DOI: 10.1371/journal.pone.0152322)
Molecular signatures of plastic phenotypes in two eusocial insect species with simple societies
S Patalano, A Vlasova, C Wyatt, P Ewels, F Camara, PG Ferreira, CL Asher, TP Jurkowski, A Segonds-Pichon, M Bachman, I González-Navarrete, AE Minoche, F Krueger, E Lowy, M Marcet-Houben, JL Rodriguez-Ales, FS Nascimento, S Balasubramanian, T Gabaldon, JE Tarver, S Andrews, H Himmelbauer, WOH Hughes, R Guigó, W Reik, S Sumner
– Proceedings of the National Academy of Sciences of the United States of America
(2015)
112,
13970
(DOI: 10.1073/pnas.1515937112)
5-Formylcytosine can be a stable DNA modification in mammals
M Bachman, S Uribe-Lewis, X Yang, HE Burgess, M Iurlaro, W Reik, A Murrell, S Balasubramanian
– Nature chemical biology
(2015)
11,
555
(DOI: 10.1038/nchembio.1848)
High-resolution sequencing of DNA G-quadruplex secondary structures in the human genome
VS Chambers, G Marsico, JM Boutell, MD Antonio, GP Smith, S Balasubramanian
– Nature Biotechnology
(2015)
33,
877
High-throughput sequencing of DNA G-quadruplex structures in the human genome.
VS Chambers, G Marsico, JM Boutell, M Di Antonio, GP Smith, S Balasubramanian
– Nature Biotechnology
(2015)
33,
877
(DOI: 10.1038/nbt.3295)
FOXM1 binds directly to non-consensus sequences in the human genome
DA Sanders, MV Gormally, G Marsico, D Beraldi, D Tannahill, S Balasubramanian
– Genome biology
(2015)
16,
130
(DOI: 10.1186/s13059-015-0696-z)
5-Formylcytosine can be a stable DNA modification in mammals
M Bachman, S Uribe-Lewis, X Yang, HE Burgess, M Iurlaro, W Reik, A Murrell, S Balasubramanian
– Nature chemical biology
(2015)
11,
555
(DOI: 10.1038/nchembio.1848)

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