Recent Publications from the Physical Research Interest Group

Detecting RNA base methylations in single cells by in situ hybridization.

RT Ranasinghe, MR Challand, KA Ganzinger, BW Lewis, C Softley, WH Schmied, MH Horrocks, N Shivji, JW Chin, J Spencer, D Klenerman

– Nature Communications

(2018)

655

(DOI: 10.1038/s41467-017-02714-7)

Gaussian approximation potential modeling of lithium intercalation in carbon nanostructures

S Fujikake, VL Deringer, TH Lee, M Krynski, SR Elliott, G Csányi

– Journal of Chemical Physics

(2018)

148,

(DOI: 10.1063/1.5016317)

Single-Molecule Light-Sheet Imaging of Suspended T Cells

SF Lee

– Biophysical Journal

(2018)

Anharmonic acoustic effects during DNA hybridization on an electrochemical quartz crystal resonator

S Swarbrick, I Efimov, VP Ostanin, D Klenerman, A Stolzing, SK Ghosh

– Electrochimica Acta

(2018)

269,

526

(DOI: 10.1016/j.electacta.2018.03.014)

Water-Dispersible Polydopamine-Coated Nanofibers for Stimulation of Neuronal Growth and Adhesion.

S Sieste, T Mack, CV Synatschke, C Schilling, C Meyer Zu Reckendorf, L Pendi, S Harvey, FS Ruggeri, TPJ Knowles, C Meier, DYW Ng, T Weil, B Knöll

– Adv Healthc Mater

(2018)

e1701485

(DOI: 10.1002/adhm.201701485)

Measurement of Tau Filament Fragmentation Provides Insights into Prion-like Spreading.

F Kundel, L Hong, B Falcon, WA McEwan, TCT Michaels, G Meisl, N Esteras, AY Abramov, TJP Knowles, M Goedert, D Klenerman

– ACS Chem Neurosci

(2018)

(DOI: 10.1021/acschemneuro.8b00094)

A new processing scheme for ultra-high resolution direct infusion mass spectrometry data

AT Zielinski, I Kourtchev, C Bortolini, SJ Fuller, C Giorio, OAM Popoola, S Bogialli, A Tapparo, RL Jones, M Kalberer

– Atmospheric Environment

(2018)

178,

129

(DOI: 10.1016/j.atmosenv.2018.01.034)

Distinct thermodynamic signatures of oligomer generation in the aggregation of the amyloid-β peptide

SIA Cohen, R Cukalevski, TCT Michaels, A Šarić, M Törnquist, M Vendruscolo, CM Dobson, AK Buell, TPJ Knowles, S Linse

– Nature Chemistry

(2018)

(DOI: 10.1038/s41557-018-0023-x)

Understanding the thermal properties of amorphous solids using machine-learning-based interatomic potentials

GC Sosso, VL Deringer, SR Elliott, G Csányi

– Molecular Simulation

(2018)

(DOI: 10.1080/08927022.2018.1447107)

Diophantine Approach to the Classification of Two-Dimensional Lattices: Surfaces of Face-Centered Cubic Materials.

SJ Jenkins

– Langmuir

(2018)

34,

4095

(DOI: 10.1021/acs.langmuir.8b00206)

The Quadrennial Ozone Symposium 2016 (vol 34, pg 368, 2017)

S Godin-Beekmann, I Petropavlovskikh, S Reis, P Newman, W Steinbrecht, M Rex, ML Santee, RS Eckman, X Zheng, MB Tully, DS Stevenson, P Young, J Pyle, M Weber, J Tamminen, G Mills, AF Bais, C Heaviside, C Zerefos

– Advances in Atmospheric Sciences

(2018)

35,

368

(DOI: 10.1007/s00376-018-0001-7)

Prospects for reconstructing paleoenvironmental conditions from organic compounds in polar snow and ice

C Giorio, N Kehrwald, C Barbante, M Kalberer, ACF King, ER Thomas, EW Wolff, P Zennaro

– Quaternary Science Reviews

(2018)

183,

(DOI: 10.1016/j.quascirev.2018.01.007)

Capturing resting T cells: the perils of PLL

AM Santos, A Ponjavic, M Fritzsche, RA Fernandes, JB de la Serna, MJ Wilcock, F Schneider, I Urbančič, J McColl, C Anzilotti, KA Ganzinger, M Aßmann, D Depoil, RJ Cornall, ML Dustin, D Klenerman, SJ Davis, C Eggeling, SF Lee

– Nature Immunology

(2018)

19,

203

(DOI: 10.1038/s41590-018-0048-8)

Chemical Kinetics for Bridging Molecular Mechanisms and Macroscopic Measurements of Amyloid Fibril Formation.

TCT Michaels, A Šarić, J Habchi, S Chia, G Meisl, M Vendruscolo, CM Dobson, TPJ Knowles

– Annu Rev Phys Chem

(2018)

(DOI: 10.1146/annurev-physchem-050317-021322)

Chemical and climatic drivers of radiative forcing due to changes in stratospheric and tropospheric ozone over the 21st century

A Banerjee, AC Maycock, JA Pyle

– Atmospheric Chemistry and Physics

(2018)

18,

2899

(DOI: 10.5194/acp-18-2899-2018)

Real-Time Intrinsic Fluorescence Visualization and Sizing of Proteins and Protein Complexes in Microfluidic Devices.

PK Challa, Q Peter, MA Wright, Y Zhang, KL Saar, JA Carozza, JLP Benesch, TPJ Knowles

– Anal Chem

(2018)

90,

3849

(DOI: 10.1021/acs.analchem.7b04523)

Maximizing the field of view and accuracy in 3D Single Molecule Localization Microscopy

SA Rehman, AR Carr, MO Lenz, SF Lee, K O'Holleran

– Opt Express

(2018)

26,

4631

(DOI: 10.1364/OE.26.004631)

Shedding light on aberrant interactions - a review of modern tools for studying protein aggregates

F Kundel, L Tosatto, DR Whiten, DC Wirthensohn, MH Horrocks, D Klenerman

– The FEBS journal

(2018)

(DOI: 10.1111/febs.14409)

TEMPORARY REMOVAL: Massively parallel C. elegans tracking provides multi-dimensional fingerprints for phenotypic discovery.

M Perni, PK Challa, JB Kirkegaard, R Limbocker, M Koopman, MC Hardenberg, P Sormanni, T Müller, KL Saar, LWY Roode, J Habchi, G Vecchi, NW Fernando, S Casford, EAA Nollen, M Vendruscolo, CM Dobson, TPJ Knowles

– J Neurosci Methods

(2018)

(DOI: 10.1016/j.jneumeth.2018.02.005)

Bifunctional fluorescent probes for detection of amyloid aggregates and reactive oxygen species

L-M Needham, J Weber, JWB Fyfe, OM Kabia, DT Do, E Klimont, Y Zhang, M Rodrigues, CM Dobson, S Ghandi, SE Bohndiek, TN Snaddon, SF Lee

– Royal Society open science

(2018)

171399

(DOI: 10.1098/rsos.171399)

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