Herchel Smith Professor of Medicinal Chemistry

Nucleic acids are fundamental to life. Our research is focused on the chemical biology of nucleic acids, and employs the principles of chemistry and the molecular sciences to address questions of importance in biology and medicine. Projects are inherently interdisciplinary and will provide scope for a diversity of intellectual and experimental approaches that include: organic synthesis, biophysics, molecular and cellular biology and genomics. Our scientific goals are problem-driven, which constantly raises the need to invent new methodology.

 

A major interest is to elucidate and manipulate mechanisms that control the expression of genes (either transcription, or translation). We are particularly interested in the role of non-canonical nucleic acid structures that control gene expression (e.g. G-quadruplexes, micro RNA and RNA structures in the 5' untranslated regions of mRNAs). Our goal is to design and synthesise small organic molecules that target such structures and alter the expression of certain genes of interest. Such small molecule gene regulators are valuable tools to study mechanisms in biology and will also open up new approaches for therapeutics and molecular medicine, particularly for diseases characterized by aberrant expression of certain genes (e.g. various cancers).

Our fundamental science will inevitably create opportunities for translation and commercialisation. One such example was our invention (with Professor David Klenerman) of new DNA sequencing technology ("Solexa sequencing") that was commercialised as a Cambridge University spinout company (now part of Illumina Inc.) and is used routinely for applications in genomics, including human genome sequencing. 

Hear Shankar Balasubramanian discuss some of the group's research.

Watch Professor Balasubramanian discuss his research

Take a tour of the Balasubramanian Lab

Publications

Solid-Phase Synthesis of N-Alkyl-N-(β-keto)amides and 1,2,4,5-Tetrasubstituted Imidazoles Using a Traceless Cleavage Strategy
HB Lee, S Balasubramanian
Organic letters
(2000)
2
Screening for oligonucleotide binding affinity by a convenient fluorescence competition assay.
JG Harrison, X Liu, S Balasubramanian
Nucleic Acids Research
(1999)
27
Solid phase synthesis - designer linkers for combinatorial chemistry: a review
K Gordon, S Balasubramanian
Journal of Chemical Technology & Biotechnology
(1999)
74
Exploring a chemical encoding strategy for combinatorial synthesis using Friedel-Crafts alkylation
RH Scott, C Barnes, U Gerhard, S Balasubramanian
Chem Commun (Camb)
(1999)
Recent advances in solid-phase chemical methodologies.
K Gordon, S Balasubramanian
Curr Opin Drug Discov Devel
(1999)
2
Inhibition of human telomerase by PNA-cationic peptide conjugates
JG Harrison, C Frier, R Laurant, R Dennis, KD Raney, S Balasubramanian
Bioorganic & Medicinal Chemistry Letters
(1999)
9
Studies on a dithiane-protected benzoin photolabile safety catch linker for solid-phase synthesis
HB Lee, S Balasubramanian
J Org Chem
(1999)
64
Thermodynamic Melting Studies on Oligonucleotide-Peptide Conjugates
S Balasubramanian, C Frier, JG Harrison
Nucleosides and Nucleotides
(1999)
18
Synthesis and hybridization analysis of a small library of peptide-oligonucleotide conjugates
JG Harrison, S Balasubramanian
Nucleic Acids Res
(1998)
26
Optically Biased Diffusion of Single Molecules Studied by Confocal Fluorescence Microscopy
MA Osborne, S Balasubramanian, WS Furey, D Klenerman
Journal of Physical Chemistry B
(1998)
102

Research Group

Research Interest Group

Telephone number

01223 336347

Email address