Herchel Smith Professor of Medicinal Chemistry

Nucleic acids are fundamental to life. Our research is focused on the chemical biology of nucleic acids, and employs the principles of chemistry and the molecular sciences to address questions of importance in biology and medicine. Projects are inherently interdisciplinary and will provide scope for a diversity of intellectual and experimental approaches that include: organic synthesis, biophysics, molecular and cellular biology and genomics. Our scientific goals are problem-driven, which constantly raises the need to invent new methodology.

 

A major interest is to elucidate and manipulate mechanisms that control the expression of genes (either transcription, or translation). We are particularly interested in the role of non-canonical nucleic acid structures that control gene expression (e.g. G-quadruplexes, micro RNA and RNA structures in the 5' untranslated regions of mRNAs). Our goal is to design and synthesise small organic molecules that target such structures and alter the expression of certain genes of interest. Such small molecule gene regulators are valuable tools to study mechanisms in biology and will also open up new approaches for therapeutics and molecular medicine, particularly for diseases characterized by aberrant expression of certain genes (e.g. various cancers).

Our fundamental science will inevitably create opportunities for translation and commercialisation. One such example was our invention (with Professor David Klenerman) of new DNA sequencing technology ("Solexa sequencing") that was commercialised as a Cambridge University spinout company (now part of Illumina Inc.) and is used routinely for applications in genomics, including human genome sequencing. 

Hear Shankar Balasubramanian discuss some of the group's research.

Watch Professor Balasubramanian discuss his research

Take a tour of the Balasubramanian Lab

Publications

Selection of zinc fingers that bind single-stranded telomeric DNA in the G-quadruplex conformation
M Isalan, SD Patel, S Balasubramanian, Y Choo
Biochemistry
(2000)
40
Exploring a benzyloxyaniline linker utilizing ceric ammonium nitrate (CAN) as a cleavage reagent: Solid-phase synthesis of N-unsubstituted beta-lactams and secondary amides
KH Gordon, S Balasubramanian
Organic Letters
(2000)
3
The science of chemical discovery: Probing the unknown with new technologies
S Balasubramanian
Drug discovery today
(2000)
5
FRET fluctuation spectroscopy: Exploring the conformational dynamics of a DNA hairpin loop
MI Wallace, L Ying, S Balasubramanian, D Klenerman
Journal of Physical Chemistry B
(2000)
104
A stereoselective synthesis of 1,3,4-substituted β-lactams from polymer-supported chiral oxazolidine aldehyde
K Gordon, M Bolger, N Khan, S Balasubramanian
Tetrahedron Letters
(2000)
41
Strategies for the synthesis of fluorescently labelled PNA
X Liu, S Balasubramanian
Tetrahedron Letters
(2000)
41
Single-molecule analysis of DNA immobilized on microspheres
MA Osborne, WS Furey, D Klenerman, S Balasubramanian
Analytical Chemistry
(2000)
72
Double fluorescence resonance energy transfer to explore multicomponent binding interactions: A case study of DNA mismatches
I Horsey, WS Furey, JG Harrison, MA Osborne, S Balasubramanian
Chemical Communications
(2000)
Recent developments in the encoding and deconvolution of combinatorial libraries.
C Barnes, S Balasubramanian
Current Opinion in Chemical Biology
(2000)
4
Ratiometric analysis of single-molecule fluorescence resonance energy transfer using logical combinations of threshold criteria: A study of 12-mer DNA
L Ying, MI Wallace, S Balasubramanian, D Klenerman
The Journal of Physical Chemistry B
(2000)
104

Research Group

Research Interest Group

Telephone number

01223 336347

Email address