Herchel Smith Professor of Medicinal Chemistry

Nucleic acids are fundamental to life. Our research is focused on the chemical biology of nucleic acids, and employs the principles of chemistry and the molecular sciences to address questions of importance in biology and medicine. Projects are inherently interdisciplinary and will provide scope for a diversity of intellectual and experimental approaches that include: organic synthesis, biophysics, molecular and cellular biology and genomics. Our scientific goals are problem-driven, which constantly raises the need to invent new methodology.

 

A major interest is to elucidate and manipulate mechanisms that control the expression of genes (either transcription, or translation). We are particularly interested in the role of non-canonical nucleic acid structures that control gene expression (e.g. G-quadruplexes, micro RNA and RNA structures in the 5' untranslated regions of mRNAs). Our goal is to design and synthesise small organic molecules that target such structures and alter the expression of certain genes of interest. Such small molecule gene regulators are valuable tools to study mechanisms in biology and will also open up new approaches for therapeutics and molecular medicine, particularly for diseases characterized by aberrant expression of certain genes (e.g. various cancers).

Our fundamental science will inevitably create opportunities for translation and commercialisation. One such example was our invention (with Professor David Klenerman) of new DNA sequencing technology ("Solexa sequencing") that was commercialised as a Cambridge University spinout company (now part of Illumina Inc.) and is used routinely for applications in genomics, including human genome sequencing. 

Hear Shankar Balasubramanian discuss some of the group's research.

Watch Professor Balasubramanian discuss his research

Take a tour of the Balasubramanian Lab

Publications

Mechanism of metal-independent hydroxylation by Chromobacterium violaceum phenylalanine hydroxylase.
RT Carr, S Balasubramanian, PC Hawkins, SJ Benkovic
Biochemistry
(2002)
34
Observation of an isotope effect in the chorismate synthase reaction
S Balasubramanian, C Abell, JR Coggins
Journal of the American Chemical Society
(2002)
112
Inhibition of Chorismate Synthase by (6R)- and (6S)-6-Fluoro-5-enolpyruvylshikimate 3-Phosphate
S Balasubramanian, GM Davies, JR Coggins, C Abell
Journal of the American Chemical Society
(2002)
113
Observation of a secondary tritium isotope effect in the chorismate synthase reaction.
S Balasubramanian, JR Coggins, C Abell
Biochemistry
(2002)
34
Synthesis of diastereomerically pure 1,4,5-substituted-2-oxopiperazines on solid-phase
NM Khan, M Cano, S Balasubramanian
Tetrahedron Letters
(2002)
43
Practical synthesis of a dithiane-protected 3 ',5 '-dialkoxybenzoin photolabile safety-catch linker for solid-phase organic synthesis
M Cano, M Ladlow, S Balasubramanian
Journal of Organic Chemistry
(2001)
67
Studies on the chemical stability and functional group compatibility of the benzoin photolabile safety-catch linker using an analytical construct.
M Cano, M Ladlow, S Balasubramanian
Journal of combinatorial chemistry
(2001)
4
Solid phase chemical technologies for combinatorial chemistry.
S Balasubramanian
Journal of cellular biochemistry. Supplement
(2001)
Suppl 37
Non-Arrhenius kinetics for the loop closure of a DNA hairpin.
MI Wallace, L Ying, S Balasubramanian, D Klenerman
Proc Natl Acad Sci U S A
(2001)
98
Probing DNA Surface Attachment and Local Environment Using Single Molecule Spectroscopy
MA Osborne, CL Barnes, S Balasubramanian, D Klenerman
The Journal of Physical Chemistry B
(2001)
105

Research Group

Research Interest Group

Telephone number

01223 336347

Email address