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Yusuf Hamied Department of Chemistry

 

Publications by Professor Andreas Bender

Towards predictive resistance models for agrochemicals by combining chemical and protein similarity via proteochemometric modelling
GJP van Westen, A Bender, JP Overington
– Journal of Chemical Biology
(2014)
7,
119
(DOI: 10.1007/s12154-014-0112-2)
Synthesis and characterization of novel 2-amino-chromene-nitriles that target Bcl-2 in acute myeloid leukemia cell lines.
HK Keerthy, M Garg, CD Mohan, V Madan, D Kanojia, R Shobith, S Nanjundaswamy, DJ Mason, A Bender, Basappa, KS Rangappa, HP Koeffler
– PloS one
(2014)
9,
e107118
(DOI: 10.1371/journal.pone.0107118)
Connecting gene expression data from connectivity map and <i>in</i> <i>silico</i> target predictions for small molecule mechanism-of-action analysis
AC Ravindranath, N Perualila-Tan, A Kasim, G Drakakis, S Liggi, SC Brewerton, D Mason, MJ Bodkin, DA Evans, A Bhagwat, W Talloen, HWH Göhlmann, Z Shkedy, A Bender, QSTAR Consortium
– Molecular bioSystems
(2014)
11,
86
(DOI: 10.1039/c4mb00328d)
Novel synthetic biscoumarins target tumor necrosis factor-α in hepatocellular carcinoma in vitro and in vivo
HK Keerthy, CD Mohan, KS Siveen, JE Fuchs, S Rangappa, MS Sundaram, F Li, KS Girish, G Sethi, Basappa, A Bender, KS Rangappa
– Journal of Biological Chemistry
(2014)
289,
31879
(DOI: 10.1074/jbc.M114.593855)
Toxicity prediction using heterogeneous chemical and biological data sources
A Bender
– Toxicology Letters
(2014)
229,
S4
(DOI: 10.1016/j.toxlet.2014.06.040)
Predicting Toxic Effects of Metabolites
A Bender
(2014)
397
(DOI: 10.1002/9783527673261.ch16)
Novel Benzoxazine-Based Aglycones Block Glucose Uptake <i>In Vivo</i> by Inhibiting Glycosidases
H Bharathkumar, MS Sundaram, S Jagadish, S Paricharak, M Hemshekhar, D Mason, K Kemparaju, KS Girish, Basappa, A Bender, KS Rangappa
– PLoS ONE
(2014)
9,
e102759
(DOI: 10.1371/journal.pone.0102759)
Proteochemometric modeling in a Bayesian framework
I Cortes-Ciriano, GJ van Westen, EB Lenselink, DS Murrell, A Bender, T Malliavin
– Journal of Cheminformatics
(2014)
6,
35
(DOI: 10.1186/1758-2946-6-35)
A community effort to assess and improve drug sensitivity prediction algorithms.
JC Costello, LM Heiser, E Georgii, M Gönen, MP Menden, NJ Wang, M Bansal, M Ammad-ud-din, P Hintsanen, SA Khan, J-P Mpindi, O Kallioniemi, A Honkela, T Aittokallio, K Wennerberg, NCI DREAM Community, JJ Collins, D Gallahan, D Singer, J Saez-Rodriguez, S Kaski, JW Gray, G Stolovitzky
– Nature biotechnology
(2014)
32,
1202
(DOI: 10.1038/nbt.2877)
Towards predictive resistance models for agrochemicals by combining chemical and protein similarity via proteochemometric modelling.
GJP van Westen, A Bender, JP Overington
– BMC Chemistry
(2014)
7,
119
(DOI: 10.1007/s12154-014-0112-2)
Biofragments: An Approach towards Predicting Protein Function Using Biologically Related Fragments and its Application to Mycobacterium tuberculosis CYP126
SA Hudson, EH Mashalidis, A Bender, KJ McLean, AW Munro, C Abell
– Chembiochem : a European journal of chemical biology
(2014)
15,
549
(DOI: 10.1002/cbic.201300697)
Synthesis and biological evaluation of tetrahydropyridinepyrazoles ('PFPs') as inhibitors of STAT3 phosphorylation
CN Revanna, V Srinivasa, F Li, KS Siveen, X Dai, SN Swamy, DG Bhadregowda, G Sethi, K Mantelingu, A Bender, R Ks
– MedChemComm
(2014)
5,
32
(DOI: 10.1039/c3md00119a)
Synthesis, biological evaluation and in silico and in vitro mode-of-action analysis of novel dihydropyrimidones targeting PPAR-γ
H Bharathkumar, S Paricharak, KR Dinesh, KS Siveen, JE Fuchs, S Rangappa, CD Mohan, N Mohandas, AP Kumar, G Sethi, A Bender, Basappa, KS Rangappa
– RSC Advances
(2014)
4,
45143
(DOI: 10.1039/c4ra08713e)
Comparative mode-of-action analysis following manual and automated phenotype detection in<i>Xenopus laevis</i>
G Drakakis, AE Hendry, K Hanson, SC Brewerton, MJ Bodkin, DA Evans, GN Wheeler, A Bender
– RSC Medicinal Chemistry
(2014)
5,
386
(DOI: 10.1039/c3md00313b)
Modelling ligand selectivity of serine proteases using integrative proteochemometric approaches improves model performance and allows the multi-target dependent interpretation of features
QU Ain, O Méndez-Lucio, IC Ciriano, T Malliavin, GJP van Westen, A Bender
– Integr Biol (Camb)
(2014)
6,
1023
(DOI: 10.1039/c4ib00175c)
How Diverse Are Diversity Assessment Methods? A Comparative Analysis and Benchmarking of Molecular Descriptor Space.
A Koutsoukas, S Paricharak, WRJD Galloway, DR Spring, AP Ijzerman, RC Glen, D Marcus, A Bender
– Journal of Chemical Information and Modeling
(2013)
54,
230
(DOI: 10.1021/ci400469u)
Are phylogenetic trees suitable for chemogenomics analyses of bioactivity data sets: the importance of shared active compounds and choosing a suitable data embedding method, as exemplified on Kinases.
S Paricharak, T Klenka, M Augustin, UA Patel, A Bender
– Journal of cheminformatics
(2013)
5,
49
(DOI: 10.1186/1758-2946-5-49)
Design, synthesis and biological evaluation of a novel allosteric inhibitor of HSET that damages cancer cells with supernumerary centrosomes.
CA Watts, FM Richards, A Bender, PJ Bond, O Korb, O Kern, M Riddick, P Owen, RM Myers, J Raff, F Gergely, DI Jodrell, SV Ley
– Molecular Cancer Therapeutics
(2013)
12,
B96
(DOI: 10.1158/1535-7163.targ-13-b96)
Design, synthesis, and biological evaluation of an allosteric inhibitor of HSET that targets cancer cells with supernumerary centrosomes
CA Watts, FM Richards, A Bender, PJ Bond, O Korb, O Kern, M Riddick, P Owen, RM Myers, J Raff, F Gergely, DI Jodrell, SV Ley
– Cell Chemical Biology
(2013)
20,
1399
(DOI: 10.1016/j.chembiol.2013.09.012)
Experimental Confirmation of New Drug-Target Interactions Predicted by Drug Profile Matching
L Végner, Á Peragovics, L Tombor, B Jelinek, P Czobor, A Bender, Z Simon, A Málnási-Csizmadia
– Journal of Medicinal Chemistry
(2013)
56,
8377
(DOI: 10.1021/jm400813y)

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