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Yusuf Hamied Department of Chemistry

 

Professor of Chemical Physics

The self-assembly of complex mesoscopic structures, the folding of proteins, and the complicated phenomenology of glasses are all manifestations of the underlying potential energy surface (PES). In each of these fields related ideas have emerged to explain and predict chemical and physical properties in terms of the PES. In studies of clusters and glasses the PES itself is often investigated directly, whereas for proteins and other biomolecules it is also common to define free energy surfaces, as the figure below illustrates for lysozyme.

Applications of energy landscape theory in my group range from studies of tunnelling splitting patterns in small molecules to computer simulation of protein folding and misfolding, including aggregation of misfolded proteins. Other active research topics include global optimisation and investigation of how the thermodynamic and dynamic properties of glasses are related to the underlying PES.

Two recent advances are now providing new insight into larger systems. Discrete path sampling enables dynamical properties to be obtained efficiently, and is being used to calculate folding rates for proteins. Unexpected connections between dynamics and thermodynamics have also been revealed by the application of catastrophe theory to energy landscapes, and new results are now being obtained to characterize phase transitions.

Publications

Colloidal self-assembly: designed to yield.
D Frenkel, DJ Wales
– Nat Mater
(2011)
10,
410
Self-assembly of anisotropic particles
SN Fejer, D Chakrabarti, DJ Wales
– Soft Matter
(2011)
7,
3553
Coupled linear and rotary motion in supramolecular helix handedness inversion
D Chakrabarti, DJ Wales
– Soft Matter
(2011)
7,
2325
Self-assembly of nanoclusters: An energy landscape perspective
D Chakrabarti, SN Fejer, DJ Wales
(2011)
4,
58
Structure, rearrangements and evaporation of rotating atomic clusters
MA Miller, DJ Wales
– Molecular Physics
(2010)
89,
533
Structure and properties of Nen+ clusters from a diatomics-in-molecules approach
FY Naumkin, DJ Wales
– Molecular Physics
(2010)
93,
633
Energy Landscapes and Structure Prediction Using Basin‐Hopping
DJ Wales
(2010)
29
Modelling proteins: conformational sampling and reconstruction of folding kinetics.
K Klenin, B Strodel, DJ Wales, W Wenzel
– Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics
(2010)
1814,
977
Virulence-associated substitution D222G in the hemagglutinin of 2009 pandemic influenza A(H1N1) virus affects receptor binding
S Chutinimitkul, S Herfst, J Steel, AC Lowen, J Ye, D van Riel, EJA Schrauwen, TM Bestebroer, B Koel, DF Burke, KH Sutherland-Cash, CS Whittleston, CA Russell, DJ Wales, DJ Smith, M Jonges, A Meijer, M Koopmans, GF Rimmelzwaan, T Kuiken, ADME Osterhaus, A García-Sastre, DR Perez, RAM Fouchier
– Journal of virology
(2010)
84,
11802
Transmembrane Structures for Alzheimer's A beta(1-42) Oligomers
B Strodel, JWL Lee, CS Whittleston, DJ Wales
– Journal of the American Chemical Society
(2010)
132,
13300
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Research Group

Research Interest Groups

Telephone number

01223 336354

Email address

dw34@cam.ac.uk