skip to content

Yusuf Hamied Department of Chemistry

 

Professor of Chemical Physics

The self-assembly of complex mesoscopic structures, the folding of proteins, and the complicated phenomenology of glasses are all manifestations of the underlying potential energy surface (PES). In each of these fields related ideas have emerged to explain and predict chemical and physical properties in terms of the PES. In studies of clusters and glasses the PES itself is often investigated directly, whereas for proteins and other biomolecules it is also common to define free energy surfaces, as the figure below illustrates for lysozyme.

Applications of energy landscape theory in my group range from studies of tunnelling splitting patterns in small molecules to computer simulation of protein folding and misfolding, including aggregation of misfolded proteins. Other active research topics include global optimisation and investigation of how the thermodynamic and dynamic properties of glasses are related to the underlying PES.

Two recent advances are now providing new insight into larger systems. Discrete path sampling enables dynamical properties to be obtained efficiently, and is being used to calculate folding rates for proteins. Unexpected connections between dynamics and thermodynamics have also been revealed by the application of catastrophe theory to energy landscapes, and new results are now being obtained to characterize phase transitions.

Publications

Energy landscapes of clusters bound by short-ranged potentials
DJ Wales
– Chemphyschem : a European journal of chemical physics and physical chemistry
(2010)
11,
2491
The energy landscape, folding pathways and the kinetics of a knotted protein.
MC Prentiss, DJ Wales, PG Wolynes
– PLoS computational biology
(2010)
6,
30
Modelling the internal structure of nascent soot particles
TS Totton, D Chakrabarti, AJ Misquitta, M Sander, DJ Wales, M Kraft
– Combustion and Flame
(2010)
157,
909
Hydrogen on graphene under stress: Molecular dissociation and gap opening
H McKay, DJ Wales, SJ Jenkins, JA Verges, PL de Andres
– Physical Review B
(2010)
81,
075425
Interpolation schemes for peptide rearrangements
MS Bauer, B Strodel, SN Fejer, EF Koslover, DJ Wales
– J Chem Phys
(2010)
132,
054101
Energy landscapes: some new horizons.
DJ Wales
– Current Opinion in Structural Biology
(2010)
20,
3
Symmetrization of the AMBER and CHARMM Force Fields
E MaƂolepsza, B Strodel, M Khalili, S Trygubenko, SN Fejer, DJ Wales
– J Comput Chem
(2010)
31,
1402
Emergent Complexity from Simple Anisotropic Building Blocks: Shells, Tubes, and Spirals
SN Fejer, D Chakrabarti, DJ Wales
– ACS Nano
(2010)
4,
219-228
Energy Landscapes: Some New Horizons
DJ Wales
– Curr. Op. Struct. Biol.
(2010)
20,
3-10
Interpolation schemes for peptide rearrangements (9 pages).
MS Bauer, B Strodel, SN Fejer, EF Koslover, DJ Wales
– J. Chem. Phys.
(2010)
132,
054101
  • <
  • 31 of 69
  • >

Research Group

Research Interest Groups

Telephone number

01223 336354

Email address

dw34@cam.ac.uk