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Yusuf Hamied Department of Chemistry

 

Publications by Professor Daan Frenkel ForMemRS

Probing ergodicity in granular matter
F Paillusson, D Frenkel
– Phys Rev Lett
(2012)
109,
208001
(DOI: 10.1103/PhysRevLett.109.208001)
Intracellular release of endocytosed nanoparticles upon a change of ligand-receptor interaction
R Vácha, FJ Martinez-Veracoechea, D Frenkel
– ACS nano
(2012)
6,
10598
(DOI: 10.1021/nn303508c)
Spiers Memorial Lecture: Effect of interaction specificity on the phase behaviour of patchy particles
N Dorsaz, L Filion, F Smallenburg, D Frenkel
– Faraday Discussions
(2012)
159,
9
(DOI: 10.1039/c2fd20070h)
Colloidal crystals full of invisible vacancies
D Frenkel
– Proc Natl Acad Sci U S A
(2012)
109,
17728
(DOI: 10.1073/pnas.1215398109)
Running faster together: huge speed up of thermal ratchets due to hydrodynamic coupling.
P Malgaretti, I Pagonabarraga, D Frenkel
– Phys Rev Lett
(2012)
109,
168101
(DOI: 10.1103/PhysRevLett.109.168101)
Connecting Macroscopic Observables and Microscopic Assembly Events in Amyloid Formation Using Coarse Grained Simulations
NS Bieler, TPJ Knowles, D Frenkel, R Vácha
– PLOS Computational Biology
(2012)
8,
e1002692
(DOI: 10.1371/journal.pcbi.1002692)
A general theory of DNA-mediated and other valence-limited colloidal interactions
P Varilly, S Angioletti-Uberti, BM Mognetti, D Frenkel
– The Journal of Chemical Physics
(2012)
137,
094108
(DOI: 10.1063/1.4748100)
Quantitative prediction of the phase diagram of DNA-functionalized nanosized colloids.
BM Mladek, J Fornleitner, FJ Martinez-Veracoechea, A Dawid, D Frenkel
– Physical Review Letters
(2012)
108,
268301
(DOI: 10.1103/PhysRevLett.108.268301)
A parameter-free, solid-angle based, nearest-neighbor algorithm
JA van Meel, L Filion, C Valeriani, D Frenkel
– J Chem Phys
(2012)
136,
234107
(DOI: 10.1063/1.4729313)
Re-entrant melting as a design principle for DNA-coated colloids
S Angioletti-Uberti, BM Mognetti, D Frenkel
– Nature materials
(2012)
11,
518
(DOI: 10.1038/nmat3314)
Intrinsic disorder modulates protein self-assembly and aggregation
A De Simone, C Kitchen, AH Kwan, M Sunde, CM Dobson, D Frenkel
– Proceedings of the National Academy of Sciences
(2012)
109,
6951
(DOI: 10.1073/pnas.1118048109)
Error analysis and correction for Lattice Boltzmann simulated flow conductance in capillaries of different shapes and alignments
A Sengupta, PS Hammond, D Frenkel, ES Boek
– Journal of Computational Physics
(2012)
231,
2634
(DOI: 10.1016/j.jcp.2011.12.004)
Error analysis and correction for Lattice Boltzmann simulated flow conductance in capillaries of different shapes and alignments
A Sengupta, PS Hammond, D Frenkel, ES Boek
– Journal of Computational Physics
(2012)
231,
2634
(DOI: 10.1016/j.jcp.2011.12.004)
Controlling the temperature sensitivity of DNA-mediated colloidal interactions through competing linkages
BM Mognetti, ME Leunissen, D Frenkel
– Soft Matter
(2012)
8,
2213
(DOI: 10.1039/c2sm06635a)
Layering, freezing, and re-entrant melting of hard spheres in soft confinement
T Curk, A de Hoogh, FJ Martinez-Veracoechea, E Eiser, D Frenkel, J Dobnikar, ME Leunissen
– Phys Rev E Stat Nonlin Soft Matter Phys
(2012)
85,
021502
(DOI: 10.1103/PhysRevE.85.021502)
Layering, freezing, and re-entrant melting of hard spheres in soft confinement.
T Curk, A de Hoogh, FJ Martinez-Veracoechea, E Eiser, D Frenkel, J Dobnikar, ME Leunissen
– Phys Rev E Stat Nonlin Soft Matter Phys
(2012)
85,
021502
Controlling the temperature sensitivity of DNA-mediated colloidal interactions through competing linkages
BM Mognetti, ME Leunissen, D Frenkel
– Soft Matter
(2012)
8,
2213
(DOI: 10.1039/c2sm06635a)
Predicting DNA-mediated colloidal pair interactions
BM Mognetti, P Varilly, S Angioletti-Uberti, FJ Martinez-Veracoechea, J Dobnikar, ME Leunissen, D Frenkel
– Proc Natl Acad Sci U S A
(2012)
109,
E378
(DOI: 10.1073/pnas.1119991109)
Understanding molecular simulation: From algorithms to applications
D Frenkel, B Smit
(2012)
Re-entrant melting as a design principle for DNA-coated colloids
S Angioletti-Uberti, BM Mognetti, D Frenkel
– Nature Materials
(2012)
11,
518
(DOI: 10.1038/nmat3314)

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