Herchel Smith Professor of Medicinal Chemistry

Nucleic acids are fundamental to life. Our research is focused on the chemical biology of nucleic acids, and employs the principles of chemistry and the molecular sciences to address questions of importance in biology and medicine. Projects are inherently interdisciplinary and will provide scope for a diversity of intellectual and experimental approaches that include: organic synthesis, biophysics, molecular and cellular biology and genomics. Our scientific goals are problem-driven, which constantly raises the need to invent new methodology.

 

A major interest is to elucidate and manipulate mechanisms that control the expression of genes (either transcription, or translation). We are particularly interested in the role of non-canonical nucleic acid structures that control gene expression (e.g. G-quadruplexes, micro RNA and RNA structures in the 5' untranslated regions of mRNAs). Our goal is to design and synthesise small organic molecules that target such structures and alter the expression of certain genes of interest. Such small molecule gene regulators are valuable tools to study mechanisms in biology and will also open up new approaches for therapeutics and molecular medicine, particularly for diseases characterized by aberrant expression of certain genes (e.g. various cancers).

Our fundamental science will inevitably create opportunities for translation and commercialisation. One such example was our invention (with Professor David Klenerman) of new DNA sequencing technology ("Solexa sequencing") that was commercialised as a Cambridge University spinout company (now part of Illumina Inc.) and is used routinely for applications in genomics, including human genome sequencing. 

Hear Shankar Balasubramanian discuss some of the group's research.

Watch Professor Balasubramanian discuss his research

Take a tour of the Balasubramanian Lab

Publications

Base resolution maps reveal the importance of 5-hydroxymethylcytosine in a human glioblastoma
EA Raiber, D Beraldi, S Martinez Cuesta, GR McInroy, Z Kingsbury, J Becq, T James, M Lopes, K Allinson, S Field, S Humphray, T Santarius, C Watts, D Bentley, S Balasubramanian
Npj Genomic Medicine
(2017)
2
COMPARISON OF MATCHED GLIOBLASTOMA TUMOR AND MARGIN SAMPLES USING SINGLE BASE RESOLUTION MAPS REVEALS ACQUIRED, EARLY EPIGENETIC CHANGES THAT PREDISPOSE TO MUTATIONS DURING TUMOURIGENESIS
E-A Raiber, D Beraldi, SM Cuesta, G McInroy, Z Kingsbury, J Becq, T James, M Lopes, K Allinson, S Field, S Humphray, T Santarius, C Watts, D Bentley, S Balasubramanian
NEURO-ONCOLOGY
(2017)
19
Synthesis and biophysical analysis of modified thymine-containing DNA oligonucleotides
F Kawasaki, P Murat, Z Li, T Santner, S Balasubramanian
Chemical communications (Cambridge, England)
(2017)
53
Identification of small molecule inhibitors of the Lin28-mediated blockage of pre-let-7g processing
HL Lightfoot, EA Miska, S Balasubramanian
Organic and Biomolecular Chemistry
(2016)
14
Retinol and ascorbate drive erasure of epigenetic memory and enhance reprogramming to naive pluripotency by complementary mechanisms
TA Hore, F von Meyenn, M Ravichandran, M Bachman, G Ficz, D Oxley, F Santos, S Balasubramanian, TP Jurkowski, W Reik
Proc Natl Acad Sci U S A
(2016)
113
G-quadruplex structures mark human regulatory chromatin.
R Hänsel-Hertsch, D Beraldi, SV Lensing, G Marsico, K Zyner, A Parry, M Di Antonio, J Pike, H Kimura, M Narita, D Tannahill, S Balasubramanian
Nature genetics
(2016)
48
An Epigenetics‐Inspired DNA‐Based Data Storage System
C Mayer, GR McInroy, P Murat, P Van Delft, S Balasubramanian
Angewandte Chemie International Edition
(2016)
55
rG4-seq reveals widespread formation of G-quadruplex structures in the human transcriptome.
CK Kwok, G Marsico, AB Sahakyan, VS Chambers, S Balasubramanian
Nature Methods
(2016)
13
DSBCapture: in situ capture and sequencing of DNA breaks
SV Lensing, G Marsico, R Hänsel-Hertsch, EY Lam, D Tannahill, S Balasubramanian
Nature Methods
(2016)
13
Structural Analysis using SHALiPE to Reveal RNAG-Quadruplex Formation in Human Precursor MicroRNA
CK Kwok, AB Sahakyan, S Balasubramanian
Angewandte Chemie (International ed. in English)
(2016)
55

Research Group

Research Interest Group

Telephone number

01223 336347

Email address