Herchel Smith Professor of Medicinal Chemistry

Nucleic acids are fundamental to life. Our research is focused on the chemical biology of nucleic acids, and employs the principles of chemistry and the molecular sciences to address questions of importance in biology and medicine. Projects are inherently interdisciplinary and will provide scope for a diversity of intellectual and experimental approaches that include: organic synthesis, biophysics, molecular and cellular biology and genomics. Our scientific goals are problem-driven, which constantly raises the need to invent new methodology.

 

A major interest is to elucidate and manipulate mechanisms that control the expression of genes (either transcription, or translation). We are particularly interested in the role of non-canonical nucleic acid structures that control gene expression (e.g. G-quadruplexes, micro RNA and RNA structures in the 5' untranslated regions of mRNAs). Our goal is to design and synthesise small organic molecules that target such structures and alter the expression of certain genes of interest. Such small molecule gene regulators are valuable tools to study mechanisms in biology and will also open up new approaches for therapeutics and molecular medicine, particularly for diseases characterized by aberrant expression of certain genes (e.g. various cancers).

Our fundamental science will inevitably create opportunities for translation and commercialisation. One such example was our invention (with Professor David Klenerman) of new DNA sequencing technology ("Solexa sequencing") that was commercialised as a Cambridge University spinout company (now part of Illumina Inc.) and is used routinely for applications in genomics, including human genome sequencing. 

Hear Shankar Balasubramanian discuss some of the group's research.

Watch Professor Balasubramanian discuss his research

Take a tour of the Balasubramanian Lab

Publications

Targeting the single-strand G-rich overhang of telomeres with PNA inhibits cell growth and induces apoptosis of human immortal cells.
MA Shammas, X Liu, G Gavory, KD Raney, S Balasubramanian, RJ Shmookler Reis
Experimental cell research
(2004)
295
An investigation into solid-phase radical chemistry - Synthesis of furan rings
A Routledge, C Abell, S Balasubramanian*
Synlett
(2004)
1997
Templated ligand assembly by using G-quadruplex DNA and dynamic covalent chemistry
AM Whitney, S Ladame, S Balasubramanian
Angew Chem Int Ed Engl
(2004)
43
A proton-fuelled DNA nanomachine
D Liu, S Balasubramanian
Angew Chem Int Ed Engl
(2003)
42
Studies on the structure and dynamics of the human telomeric G quadruplex by single-molecule fluorescence resonance energy transfer
L Ying, JJ Green, H Li, D Klenerman, S Balasubramanian
Proceedings of the National Academy of Sciences of the United States of America
(2003)
100
Identification of a new RNA{middle dot}RNA interaction site for human telomerase RNA (hTR): structural implications for hTR accumulation and a dyskeratosis congenita point mutation
X Ren, G Gavory, H Li, L Ying, D Klenerman, S Balasubramanian
Nucleic acids research
(2003)
31
Dynamic covalent chemistry on self-templating peptides: Formation of a disulfide-linked β-hairpin mimic
Y Krishnan-Ghosh, S Balasubramanian
Angewandte Chemie International Edition
(2003)
42
G-quadruplex-specific peptide-hemicyanine ligands by partial combinatorial selection.
JA Schouten, S Ladame, SJ Mason, MA Cooper, S Balasubramanian
Journal of the American Chemical Society
(2003)
125
Kinetics of Unfolding the Human Telomeric DNA Quadruplex Using a PNA Trap
JJ Green, L Ying, D Klenerman, S Balasubramanian
Journal of the American Chemical Society
(2003)
125
Ultrasensitive coincidence fluorescence detection of single DNA molecules.
H Li, L Ying, JJ Green, S Balasubramanian, D Klenerman
Analytical chemistry
(2003)
75

Research Group

Research Interest Group

Telephone number

01223 336347

Email address