Herchel Smith Professor of Medicinal Chemistry

Nucleic acids are fundamental to life. Our research is focused on the chemical biology of nucleic acids, and employs the principles of chemistry and the molecular sciences to address questions of importance in biology and medicine. Projects are inherently interdisciplinary and will provide scope for a diversity of intellectual and experimental approaches that include: organic synthesis, biophysics, molecular and cellular biology and genomics. Our scientific goals are problem-driven, which constantly raises the need to invent new methodology.

 

A major interest is to elucidate and manipulate mechanisms that control the expression of genes (either transcription, or translation). We are particularly interested in the role of non-canonical nucleic acid structures that control gene expression (e.g. G-quadruplexes, micro RNA and RNA structures in the 5' untranslated regions of mRNAs). Our goal is to design and synthesise small organic molecules that target such structures and alter the expression of certain genes of interest. Such small molecule gene regulators are valuable tools to study mechanisms in biology and will also open up new approaches for therapeutics and molecular medicine, particularly for diseases characterized by aberrant expression of certain genes (e.g. various cancers).

Our fundamental science will inevitably create opportunities for translation and commercialisation. One such example was our invention (with Professor David Klenerman) of new DNA sequencing technology ("Solexa sequencing") that was commercialised as a Cambridge University spinout company (now part of Illumina Inc.) and is used routinely for applications in genomics, including human genome sequencing. 

Hear Shankar Balasubramanian discuss some of the group's research.

Watch Professor Balasubramanian discuss his research

Take a tour of the Balasubramanian Lab

Publications

Loop-length-dependent folding of G-quadruplexes
P Hazel, J Huppert, S Balasubramanian, S Neidle
Journal of the American Chemical Society
(2004)
126
Individual Molecules of Dye‐Labeled DNA Act as a Reversible Two‐Color Switch upon Application of an Electric Field
SS White, L Ying, S Balasubramanian, D Klenerman
Angew Chem Int Ed Engl
(2004)
43
Individual Molecules of Dye‐Labeled DNA Act as a Reversible Two‐Color Switch upon Application of an Electric Field
SS White, L Ying, S Balasubramanian, D Klenerman
Angewandte Chemie
(2004)
116
Measuring single-molecule nucleic acid dynamics in solution by two-color filtered ratiometric fluorescence correlation spectroscopy
H Li, X Ren, L Ying, S Balasubramanian, D Klenerman
Proc Natl Acad Sci U S A
(2004)
101
Inhibition of Human Telomerase Activity by an Engineered Zinc Finger Protein that Binds G-Quadruplexes
SD Patel, M Isalan, G Gavory, S Ladame, Y Choo, S Balasubramanian
Biochemistry
(2004)
43
Tetrapeptides induce selective recognition for G-quadruplexes when conjugated to a DNA-binding platform
S Ladame, JA Schouten, J Stuart, J Roldan, S Neidle, S Balasubramanian
Organic & Biomolecular Chemistry
(2004)
2
Formation of an interlocked quadruplex dimer by d(GGGT)
Y Krishnan-Ghosh, D Liu, S Balasubramanian
Journal of the American Chemical Society
(2004)
126
Studies on the chemical stability and synthetic utility of an oxazolidine linker for solid-phase chemistry.
AJ Wills, M Cano, S Balasubramanian
The Journal of organic chemistry
(2004)
69
Molecule by Molecule Direct and Quantitative Counting of Antibody−Protein Complexes in Solution
H Li, D Zhou, H Browne, S Balasubramanian, D Klenerman
Analytical Chemistry
(2004)
76
A PNA4 quadruplex.
Y Krishnan-Ghosh, E Stephens, S Balasubramanian
J Am Chem Soc
(2004)
126

Research Group

Research Interest Group

Telephone number

01223 336347

Email address