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Yusuf Hamied Department of Chemistry

 

Herchel Smith Professor of Medicinal Chemistry

Nucleic acids are fundamental to life. Our research is focused on the chemical biology of nucleic acids, and employs the principles of chemistry and the molecular sciences to address questions of importance in biology and medicine. Projects are inherently interdisciplinary and will provide scope for a diversity of intellectual and experimental approaches that include: organic synthesis, biophysics, molecular and cellular biology and genomics. Our scientific goals are problem-driven, which constantly raises the need to invent new methodology.

 

A major interest is to elucidate and manipulate mechanisms that control the expression of genes (either transcription, or translation). We are particularly interested in the role of non-canonical nucleic acid structures that control gene expression (e.g. G-quadruplexes, micro RNA and RNA structures in the 5' untranslated regions of mRNAs). Our goal is to design and synthesise small organic molecules that target such structures and alter the expression of certain genes of interest. Such small molecule gene regulators are valuable tools to study mechanisms in biology and will also open up new approaches for therapeutics and molecular medicine, particularly for diseases characterized by aberrant expression of certain genes (e.g. various cancers).

Our fundamental science will inevitably create opportunities for translation and commercialisation. One such example was our invention (with Professor David Klenerman) of new DNA sequencing technology ("Solexa sequencing") that was commercialised as a Cambridge University spinout company (now part of Illumina Inc.) and is used routinely for applications in genomics, including human genome sequencing. 

Hear Shankar Balasubramanian discuss some of the group's research.

Watch Professor Balasubramanian discuss his research

Take a tour of the Balasubramanian Lab

Publications

A conserved quadruplex motif located in a transcription activation site of the human c-kit oncogene
H Fernando, AP Reszka, J Huppert, S Ladame, S Rankin, AR Venkitaraman, S Neidle, S Balasubramanian
– Biochemistry
(2006)
45,
7854
Analysis of human telomerase activity and function by two color single molecule coincidence fluorescence spectroscopy.
X Ren, H Li, RW Clarke, DA Alves, L Ying, D Klenerman, S Balasubramanian
– J Am Chem Soc
(2006)
128,
4992
A reversible pH-driven DNA nanoswitch array.
D Liu, A Bruckbauer, C Abell, S Balasubramanian, D-J Kang, D Klenerman, D Zhou
– J Am Chem Soc
(2006)
128,
2067
Exploring the recognition of quadruplex DNA by an engineered Cys2-His2 zinc finger protein
S Ladame, JA Schouten, J Roldan, JE Redman, S Neidle, S Balasubramanian
– Biochemistry
(2006)
45,
1393
DNA molecular motor driven micromechanical cantilever arrays
W Shu, D Liu, M Watari, CK Riener, T Strunz, ME Welland, S Balasubramanian, RA McKendry
– Journal of the American Chemical Society
(2005)
127,
17054
PNA forms an i-motif
Y Krishnan-Ghosh, E Stephens, S Balasubramanian
– Chemical communications (Cambridge, England)
(2005)
5278
Targeting nucleic acid secondary structures with polyamides using an optimized dynamic combinatorial approach.
S Ladame, AM Whitney, S Balasubramanian
– Angewandte Chemie (International ed. in English)
(2005)
44,
5736
Putative DNA quadruplex formation within the human c-kit oncogene
S Rankin, AP Reszka, J Huppert, M Zloh, GN Parkinson, AK Todd, S Ladame, S Balasubramanian, S Neidle
– Journal of the American Chemical Society
(2005)
127,
10584
Prevalence of quadruplexes in the human genome
JL Huppert, S Balasubramanian
– Nucleic Acids Res
(2005)
33,
2908
Dynamic covalent chemistry on self-templating PNA oligomers: Formation of a bimolecular PNA quadruplex
Y Krishnan-Ghosh, AM Whitney, S Balasubramanian
– Chemical communications (Cambridge, England)
(2005)
3068
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Research Group

Research Interest Group

Telephone number

01223 336347

Email address

sb10031@cam.ac.uk