Herchel Smith Professor of Medicinal Chemistry

Nucleic acids are fundamental to life. Our research is focused on the chemical biology of nucleic acids, and employs the principles of chemistry and the molecular sciences to address questions of importance in biology and medicine. Projects are inherently interdisciplinary and will provide scope for a diversity of intellectual and experimental approaches that include: organic synthesis, biophysics, molecular and cellular biology and genomics. Our scientific goals are problem-driven, which constantly raises the need to invent new methodology.

 

A major interest is to elucidate and manipulate mechanisms that control the expression of genes (either transcription, or translation). We are particularly interested in the role of non-canonical nucleic acid structures that control gene expression (e.g. G-quadruplexes, micro RNA and RNA structures in the 5' untranslated regions of mRNAs). Our goal is to design and synthesise small organic molecules that target such structures and alter the expression of certain genes of interest. Such small molecule gene regulators are valuable tools to study mechanisms in biology and will also open up new approaches for therapeutics and molecular medicine, particularly for diseases characterized by aberrant expression of certain genes (e.g. various cancers).

Our fundamental science will inevitably create opportunities for translation and commercialisation. One such example was our invention (with Professor David Klenerman) of new DNA sequencing technology ("Solexa sequencing") that was commercialised as a Cambridge University spinout company (now part of Illumina Inc.) and is used routinely for applications in genomics, including human genome sequencing. 

Hear Shankar Balasubramanian discuss some of the group's research.

Watch Professor Balasubramanian discuss his research

Take a tour of the Balasubramanian Lab

Publications

Decoding genomes.
S Balasubramanian
Biochemical Society transactions
(2015)
43
Solexa Sequencing: Decoding Genomes on a Population Scale
S Balasubramanian
Clin Chem
(2015)
61
5-formylcytosine alters the structure of the DNA double helix
EA Raiber, P Murat, DY Chirgadze, D Beraldi, BF Luisi, S Balasubramanian
Nature Structural and Molecular Biology
(2015)
22
Dual Binding of an Antibody and a Small Molecule Increases the Stability of TERRA G‐Quadruplex
PM Yangyuoru, M Di Antonio, C Ghimire, G Biffi, S Balasubramanian, H Mao
Angewandte Chemie (Weinheim an der Bergstrasse, Germany)
(2014)
127
Dual binding of an antibody and a small molecule increases the stability of TERRA G-quadruplex.
PM Yangyuoru, M Di Antonio, C Ghimire, G Biffi, S Balasubramanian, H Mao
Angewandte Chemie International Edition
(2014)
54
The biology and genomic localization of cytosine modifications
GR McInroy, NM Bell, G Ficz, S Balasubramanian, W Reik, E-A Raiber
Epigenetics and Human Health
(2014)
4
Suppression of the FOXM1 transcriptional programme via novel small molecule inhibition.
MV Gormally, TS Dexheimer, G Marsico, DA Sanders, C Lowe, D Matak-Vinković, S Michael, A Jadhav, G Rai, DJ Maloney, A Simeonov, S Balasubramanian
Nature communications
(2014)
5
Determinants of G quadruplex-induced epigenetic instability in REV1-deficient cells
D Schiavone, G Guilbaud, P Murat, C Papadopoulou, P Sarkies, MN Prioleau, S Balasubramanian, JE Sale
EMBO Journal
(2014)
33
Targeting DNA G‐Quadruplexes with Helical Small Molecules
S Müller, K Laxmi-Reddy, PV Jena, B Baptiste, Z Dong, F Godde, T Ha, R Rodriguez, S Balasubramanian, I Huc
Chembiochem
(2014)
15
5-Hydroxymethylcytosine is a predominantly stable DNA modification.
M Bachman, S Uribe-Lewis, X Yang, M Williams, A Murrell, S Balasubramanian
Nature chemistry
(2014)
6

Research Group

Research Interest Group

Telephone number

01223 336347

Email address