Herchel Smith Professor of Medicinal Chemistry

Nucleic acids are fundamental to life. Our research is focused on the chemical biology of nucleic acids, and employs the principles of chemistry and the molecular sciences to address questions of importance in biology and medicine. Projects are inherently interdisciplinary and will provide scope for a diversity of intellectual and experimental approaches that include: organic synthesis, biophysics, molecular and cellular biology and genomics. Our scientific goals are problem-driven, which constantly raises the need to invent new methodology.

 

A major interest is to elucidate and manipulate mechanisms that control the expression of genes (either transcription, or translation). We are particularly interested in the role of non-canonical nucleic acid structures that control gene expression (e.g. G-quadruplexes, micro RNA and RNA structures in the 5' untranslated regions of mRNAs). Our goal is to design and synthesise small organic molecules that target such structures and alter the expression of certain genes of interest. Such small molecule gene regulators are valuable tools to study mechanisms in biology and will also open up new approaches for therapeutics and molecular medicine, particularly for diseases characterized by aberrant expression of certain genes (e.g. various cancers).

Our fundamental science will inevitably create opportunities for translation and commercialisation. One such example was our invention (with Professor David Klenerman) of new DNA sequencing technology ("Solexa sequencing") that was commercialised as a Cambridge University spinout company (now part of Illumina Inc.) and is used routinely for applications in genomics, including human genome sequencing. 

Hear Shankar Balasubramanian discuss some of the group's research.

Watch Professor Balasubramanian discuss his research

Take a tour of the Balasubramanian Lab

Publications

Determinants of G quadruplex-induced epigenetic instability in REV1-deficient cells.
D Schiavone, G Guilbaud, P Murat, C Papadopoulou, P Sarkies, M-N Prioleau, S Balasubramanian, JE Sale
The EMBO journal
(2014)
33
OxBS-450K: A method for analysing hydroxymethylation using 450K BeadChips
SK Stewart, TJ Morris, P Guilhamon, H Bulstrode, M Bachman, S Balasubramanian, S Beck
Methods (San Diego, Calif.)
(2014)
72
Chemical methods for decoding cytosine modifications in DNA
MJ Booth, E-A Raiber, S Balasubramanian
Chem Rev
(2014)
115
Elevated levels of G-quadruplex formation in human stomach and liver cancer tissues.
G Biffi, D Tannahill, J Miller, WJ Howat, S Balasubramanian
Plos One
(2014)
9
Human genomic regions with exceptionally high levels of population differentiation identified from 911 whole-genome sequences.
V Colonna, Q Ayub, Y Chen, L Pagani, P Luisi, M Pybus, E Garrison, Y Xue, C Tyler-Smith, 1000 Genomes Project Consortium, GR Abecasis, A Auton, LD Brooks, MA DePristo, RM Durbin, RE Handsaker, HM Kang, GT Marth, GA McVean
Genome Biology
(2014)
15
Addendum: Quantitative sequencing of 5-formylcytosine in DNA at single-base resolution.
MJ Booth, G Marsico, M Bachman, D Beraldi, S Balasubramanian
Nature chemistry
(2014)
6
Chemical biology on the genome
S Balasubramanian
Bioorganic and Medicinal Chemistry
(2014)
22
Reprogramming the mechanism of action of chlorambucil by coupling to a G-quadruplex ligand.
M Di Antonio, KIE McLuckie, S Balasubramanian
J Am Chem Soc
(2014)
136
Quantitative sequencing of 5-formylcytosine in DNA at single-base resolution
MJ Booth, G Marsico, M Bachman, D Beraldi, S Balasubramanian
Nature Chemistry
(2014)
6
G-quadruplexes regulate Epstein-Barr virus-encoded nuclear antigen 1 mRNA translation.
P Murat, J Zhong, L Lekieffre, NP Cowieson, JL Clancy, T Preiss, S Balasubramanian, R Khanna, J Tellam
Nature chemical biology
(2014)
10

Research Group

Research Interest Group

Telephone number

01223 336347

Email address