Herchel Smith Professor of Medicinal Chemistry

Nucleic acids are fundamental to life. Our research is focused on the chemical biology of nucleic acids, and employs the principles of chemistry and the molecular sciences to address questions of importance in biology and medicine. Projects are inherently interdisciplinary and will provide scope for a diversity of intellectual and experimental approaches that include: organic synthesis, biophysics, molecular and cellular biology and genomics. Our scientific goals are problem-driven, which constantly raises the need to invent new methodology.

 

A major interest is to elucidate and manipulate mechanisms that control the expression of genes (either transcription, or translation). We are particularly interested in the role of non-canonical nucleic acid structures that control gene expression (e.g. G-quadruplexes, micro RNA and RNA structures in the 5' untranslated regions of mRNAs). Our goal is to design and synthesise small organic molecules that target such structures and alter the expression of certain genes of interest. Such small molecule gene regulators are valuable tools to study mechanisms in biology and will also open up new approaches for therapeutics and molecular medicine, particularly for diseases characterized by aberrant expression of certain genes (e.g. various cancers).

Our fundamental science will inevitably create opportunities for translation and commercialisation. One such example was our invention (with Professor David Klenerman) of new DNA sequencing technology ("Solexa sequencing") that was commercialised as a Cambridge University spinout company (now part of Illumina Inc.) and is used routinely for applications in genomics, including human genome sequencing. 

Hear Shankar Balasubramanian discuss some of the group's research.

Watch Professor Balasubramanian discuss his research

Take a tour of the Balasubramanian Lab

Publications

Selective Chemical Labeling of Natural T Modifications in DNA
RE Hardisty, F Kawasaki, AB Sahakyan, S Balasubramanian
Journal of the American Chemical Society
(2015)
137
G-quadruplex ligands exhibit differential G-tetrad selectivity.
DD Le, M Di Antonio, LKM Chan, S Balasubramanian
Chem Commun (Camb)
(2015)
51
Accurate measurement of 5-methylcytosine and 5-hydroxymethylcytosine in human cerebellum DNA by oxidative bisulfite on an array (OxBS-array).
SF Field, D Beraldi, M Bachman, SK Stewart, S Beck, S Balasubramanian
Plos One
(2015)
10
Formation and abundance of 5-hydroxymethylcytosine in RNA.
SM Huber, P van Delft, L Mendil, M Bachman, K Smollett, F Werner, EA Miska, S Balasubramanian
Chembiochem
(2015)
16
Insights into the mechanism of a G-quadruplex-unwinding DEAH-box helicase.
MC Chen, P Murat, K Abecassis, AR Ferré-D'Amaré, S Balasubramanian
Nucleic Acids Res
(2015)
43
Decoding genomes.
S Balasubramanian
Biochemical Society Transactions
(2015)
43
5-formylcytosine alters the structure of the DNA double helix
EA Raiber, P Murat, DY Chirgadze, D Beraldi, BF Luisi, S Balasubramanian
Nature Structural and Molecular Biology
(2015)
22
Solexa sequencing: Decoding genomes on a population scale
S Balasubramanian
Clinical chemistry
(2015)
61
Dual Binding of an Antibody and a Small Molecule Increases the Stability of TERRA G-Quadruplex.
PM Yangyuoru, M Di Antonio, C Ghimire, G Biffi, S Balasubramanian, H Mao
Angew Chem Weinheim Bergstr Ger
(2014)
127
Dual binding of an antibody and a small molecule increases the stability of TERRA G-quadruplex
PM Yangyuoru, M Di Antonio, C Ghimire, G Biffi, S Balasubramanian, H Mao
Angew Chem Int Ed Engl
(2014)
54

Research Group

Research Interest Group

Telephone number

01223 336347

Email address