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Yusuf Hamied Department of Chemistry

 

Professor of Chemical Physics

The self-assembly of complex mesoscopic structures, the folding of proteins, and the complicated phenomenology of glasses are all manifestations of the underlying potential energy surface (PES). In each of these fields related ideas have emerged to explain and predict chemical and physical properties in terms of the PES. In studies of clusters and glasses the PES itself is often investigated directly, whereas for proteins and other biomolecules it is also common to define free energy surfaces, as the figure below illustrates for lysozyme.

Applications of energy landscape theory in my group range from studies of tunnelling splitting patterns in small molecules to computer simulation of protein folding and misfolding, including aggregation of misfolded proteins. Other active research topics include global optimisation and investigation of how the thermodynamic and dynamic properties of glasses are related to the underlying PES.

Two recent advances are now providing new insight into larger systems. Discrete path sampling enables dynamical properties to be obtained efficiently, and is being used to calculate folding rates for proteins. Unexpected connections between dynamics and thermodynamics have also been revealed by the application of catastrophe theory to energy landscapes, and new results are now being obtained to characterize phase transitions.

Publications

Characterization of anharmonicities on complex potential energy surfaces: Perturbation theory and simulation
F Calvo, JPK Doye, DJ Wales
– The Journal of Chemical Physics
(2001)
115,
9627-9636
Modeling the structure of clusters of C60 molecules -: art. no. 235409
JPK Doye, DJ Wales, W Branz, F Calvo
– Physical Review B
(2001)
64,
2354091
Crystals of binary Lennard-Jones solids
TF Middleton, J Hernandez-Rojas, PN Mortenson, DJ Wales
– Physical Review B Condensed Matter and Materials Physics
(2001)
6418,
184201
A Microscopic Basis for the Global Appearance of Energy Landscapes
DJ Wales
– Science (New York, N.Y.)
(2001)
293,
2067
Comment on "effect of potential energy distribution on the melting of clusters"
F Calvo, JPK Doye, DJ Wales
– Physical Review Letters
(2001)
87,
119301/1
Comment on “effect of potential energy distribution on the melting of clusters”
F Calvo, JP Doye, DJ Wales
– Physical Review Letters
(2001)
87,
art. no.
Connections between structure, thermodynamics, and dynamics of finite systems and bulk material.
DJ Wales
– ABSTR PAP AM CHEM S
(2001)
222,
U190
Statistical thermodynamics: Taking a walk on a landscape
CL Brooks, JN Onuchic, DJ Wales
– Science (New York, N.Y.)
(2001)
293,
612
Energy landscapes of some model glass formers
TF Middleton, DJ Wales
– Physical Review B Condensed Matter and Materials Physics
(2001)
64,
024205
Polytetrahedral clusters.
JP Doye, DJ Wales
– Phys Rev Lett
(2001)
86,
5719
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Research Group

Research Interest Groups

Telephone number

01223 336354

Email address

dw34@cam.ac.uk