skip to content

Yusuf Hamied Department of Chemistry

 

Professor of Chemical Physics

The self-assembly of complex mesoscopic structures, the folding of proteins, and the complicated phenomenology of glasses are all manifestations of the underlying potential energy surface (PES). In each of these fields related ideas have emerged to explain and predict chemical and physical properties in terms of the PES. In studies of clusters and glasses the PES itself is often investigated directly, whereas for proteins and other biomolecules it is also common to define free energy surfaces, as the figure below illustrates for lysozyme.

Applications of energy landscape theory in my group range from studies of tunnelling splitting patterns in small molecules to computer simulation of protein folding and misfolding, including aggregation of misfolded proteins. Other active research topics include global optimisation and investigation of how the thermodynamic and dynamic properties of glasses are related to the underlying PES.

Two recent advances are now providing new insight into larger systems. Discrete path sampling enables dynamical properties to be obtained efficiently, and is being used to calculate folding rates for proteins. Unexpected connections between dynamics and thermodynamics have also been revealed by the application of catastrophe theory to energy landscapes, and new results are now being obtained to characterize phase transitions.

Publications

The infrared and ultraviolet spectra of single conformations of methyl-capped dipeptides: N-acetyl tryptophan amide and N-acetyl tryptophan methyl amide
BC Dian, A Longarte, S Mercier, DA Evans, DJ Wales, TS Zwier
– Journal of Chemical Physics
(2002)
117,
10688
Equilibrium properties of clusters in the harmonic superposition approximation
F Calvo, JPK Doye, DJ Wales
– Chem. Phys. Lett.
(2002)
366,
176-183
Bifurcation tunneling dynamics in the water trimer
FN Keutsch, RJ Saykally, DJ Wales
– The Journal of Chemical Physics
(2002)
117,
8823-8835
Discrete path sampling
DJ WALES
– Mol. Phys.
(2002)
100,
3285
Theoretical study of rearrangements in water dimer and trimer
T TAKETSUGU, DJ WALES
– Molecular Physics
(2002)
100,
2793
Energy landscapes of model polyalanines
PN Mortenson, DA Evans, DJ Wales
– Journal of Chemical Physics
(2002)
117,
1363
Ab initio studies of fundamental cluster rearrangement mechanisms
DJ Wales, RGA Bone
– \jacs
(2002)
114,
5399-5406
Theoretical study of water trimer
DJ Wales
– Journal of the American Chemical Society
(2002)
115,
11180
Theoretical study of rearrangements in boranes
DJ Wales, AJ Stone
– Inorganic Chemistry
(2002)
26,
3845
Empirical Correlations between Thermodynamic Properties and Intermolecular Forces
MS Westwell, MS Searle, DJ Wales, DH Williams
– Journal of the American Chemical Society
(2002)
117,
5013
  • <
  • 46 of 70
  • >

Research Group

Research Interest Groups

Telephone number

01223 336354

Email address

dw34@cam.ac.uk