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Yusuf Hamied Department of Chemistry

 

Professor of Chemical Physics

The self-assembly of complex mesoscopic structures, the folding of proteins, and the complicated phenomenology of glasses are all manifestations of the underlying potential energy surface (PES). In each of these fields related ideas have emerged to explain and predict chemical and physical properties in terms of the PES. In studies of clusters and glasses the PES itself is often investigated directly, whereas for proteins and other biomolecules it is also common to define free energy surfaces, as the figure below illustrates for lysozyme.

Applications of energy landscape theory in my group range from studies of tunnelling splitting patterns in small molecules to computer simulation of protein folding and misfolding, including aggregation of misfolded proteins. Other active research topics include global optimisation and investigation of how the thermodynamic and dynamic properties of glasses are related to the underlying PES.

Two recent advances are now providing new insight into larger systems. Discrete path sampling enables dynamical properties to be obtained efficiently, and is being used to calculate folding rates for proteins. Unexpected connections between dynamics and thermodynamics have also been revealed by the application of catastrophe theory to energy landscapes, and new results are now being obtained to characterize phase transitions.

Publications

Polytetrahedral Clusters
JP Doye, DJ Wales
– Physical review letters
(2001)
86,
5719
Transition states and rearrangement mechanisms from hybrid eigenvector-following and density functional theory. Application to C10H10 and defect migration in crystalline silicon
Y Kumeda, DJ Wales, LJ Munro
– Chemical Physics Letters
(2001)
341,
185
Dynamics and Thermodynamics of Supercooled Liquids and Glasses from a Model Energy Landscape
DJ Wales, JPK Doye
– \prb
(2001)
63,
214204
Quantum partition functions from classical distributions: Application to rare-gas clusters
F Calvo, JPK Doye, DJ Wales
– The Journal of Chemical Physics
(2001)
114,
7312
Energy Landscapes, Global Optimisation and Dynamics of the Polyalanine $\rm Ac(ala)_8NHMe$
PN Mortenson, DJ Wales
– The Journal of Chemical Physics
(2001)
114,
6443
Energy landscapes: From clusters to biomolecules.
DJ Wales
– ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY
(2001)
221,
U397
Taking a Walk on a Landscape
CL Brooks, JN Onuchic, DJ Wales
– Science
(2001)
293,
612
Polytetrahedral Clusters
JPK Doye, DJ Wales
– Phys. Rev. Lett.
(2001)
86,
5719-5722
ENERGY LANDSCAPES: Flirting with Catastrophe
RH Leary
– Sci.
(2001)
293,
201-3
Transition States and Rearrangement Mechanisms from Hybrid Eigenvector-Following and Density Functional Theory. Application to C10H10 and Defect Migration in Crystalline Silicon
Y Kumeda, LJ Munro, DJ Wales
– Chem. Phys. Lett.
(2001)
341,
185-194
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Research Group

Research Interest Groups

Telephone number

01223 336354

Email address

dw34@cam.ac.uk