Professor of Chemical Physics

The self-assembly of complex mesoscopic structures, the folding of proteins, and the complicated phenomenology of glasses are all manifestations of the underlying potential energy surface (PES). In each of these fields related ideas have emerged to explain and predict chemical and physical properties in terms of the PES. In studies of clusters and glasses the PES itself is often investigated directly, whereas for proteins and other biomolecules it is also common to define free energy surfaces, as the figure below illustrates for lysozyme.

Applications of energy landscape theory in my group range from studies of tunnelling splitting patterns in small molecules to computer simulation of protein folding and misfolding, including aggregation of misfolded proteins. Other active research topics include global optimisation and investigation of how the thermodynamic and dynamic properties of glasses are related to the underlying PES.

Two recent advances are now providing new insight into larger systems. Discrete path sampling enables dynamical properties to be obtained efficiently, and is being used to calculate folding rates for proteins. Unexpected connections between dynamics and thermodynamics have also been revealed by the application of catastrophe theory to energy landscapes, and new results are now being obtained to characterize phase transitions.

Publications

Protein energy landscape exploration with structure-based models.
S Neelamraju, DJ Wales, S Gosavi
Curr Opin Struct Biol
(2020)
64
Improving double-ended transition state searches for soft-matter systems
K Röder, DJ Wales
Journal of Chemical Physics
(2020)
153
A well-behaved theoretical framework for ReaxFF reactive force fields
D Furman, DJ Wales
J Chem Phys
(2020)
153
Efficient and exact sampling of transition path ensembles on Markovian networks
DJ Sharpe, DJ Wales
J Chem Phys
(2020)
153
Energy Landscapes of Deoxyxylo- and Xylo-Nucleic Acid Octamers.
DJ Sharpe, K Röder, DJ Wales
Journal of Physical Chemistry B
(2020)
124
From sticky-hard-sphere to Lennard-Jones-type clusters
L Trombach, RS Hoy, DJ Wales, P Schwerdtfeger
Physical Review E
(2020)
97
Defining, Calculating, and Converging Observables of a Kinetic Transition Network
TD Swinburne, DJ Wales
Journal of Chemical Theory and Computation
(2020)
16
Perspective: New Insights From Loss Function Landscapes of Neural Networks
SR Chitturi, PC Verpoort, AA Lee, DJ Wales
Machine Learning: Science and Technology
(2020)
1
Affinity-Selected Bicyclic Peptide G-Quadruplex Ligands Mimic a Protein-like Binding Mechanism.
KC Liu, K Röder, C Mayer, S Adhikari, DJ Wales, S Balasubramanian
J Am Chem Soc
(2020)
142
Counterion-Trapped-Molecules: From High Polarity and Enriched IR Spectra to Induced Isomerization
FY Naumkin, DJ Wales
ChemPhysChem
(2020)
21

Research Group

Research Interest Groups

Telephone number

01223 336354

Email address