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Yusuf Hamied Department of Chemistry

 

Professor of Chemical Physics

The self-assembly of complex mesoscopic structures, the folding of proteins, and the complicated phenomenology of glasses are all manifestations of the underlying potential energy surface (PES). In each of these fields related ideas have emerged to explain and predict chemical and physical properties in terms of the PES. In studies of clusters and glasses the PES itself is often investigated directly, whereas for proteins and other biomolecules it is also common to define free energy surfaces, as the figure below illustrates for lysozyme.

Applications of energy landscape theory in my group range from studies of tunnelling splitting patterns in small molecules to computer simulation of protein folding and misfolding, including aggregation of misfolded proteins. Other active research topics include global optimisation and investigation of how the thermodynamic and dynamic properties of glasses are related to the underlying PES.

Two recent advances are now providing new insight into larger systems. Discrete path sampling enables dynamical properties to be obtained efficiently, and is being used to calculate folding rates for proteins. Unexpected connections between dynamics and thermodynamics have also been revealed by the application of catastrophe theory to energy landscapes, and new results are now being obtained to characterize phase transitions.

Publications

Energy Landscapes for Proteins: From Single Funnels to Multifunctional Systems
K Röder, JA Joseph, BE Husic, DJ Wales
– Advanced Theory and Simulations
(2019)
2,
1800175
Energy Landscape for Fold-Switching in Regulatory Protein RfaH.
JA Joseph, D Chakraborty, DJ Wales
– Journal of Chemical Theory and Computation
(2019)
15,
731
Energy landscapes and molecule-molecule interactions
D Wales
– ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY
(2019)
257,
Energy Landscape of the Designed Protein Top7
S Neelamraju, S Gosavi, DJ Wales
– Journal of Physical Chemistry B
(2018)
122,
12282
Intrinsically Disordered Landscapes for Human CD4 Receptor Peptide.
JA Joseph, DJ Wales
– J Phys Chem B
(2018)
122,
11906
Evolved Minimal Frustration in Multifunctional Biomolecules
K Röder, DJ Wales
– Journal of Physical Chemistry B
(2018)
122,
10989
Mapping Surface Hydrophobicity of α-Synuclein Oligomers at the Nanoscale
J-E Lee, JC Sang, M Rodrigues, AR Carr, MH Horrocks, S De, MN Bongiovanni, P Flagmeier, CM Dobson, DJ Wales, SF Lee, D Klenerman
– Nano Letters
(2018)
18,
7494
Computational Investigation of RNA A‑Bulges Related to the Microtubule-Associated Protein Tau Causing Frontotemporal Dementia and Parkinsonism
DJ Wales, MD Disney, I Yildirim
– The Journal of Physical Chemistry B
(2018)
123,
57
Designing hierarchical molecular complexity: icosahedra of addressable icosahedra
SN Fejer, RG Mantell, DJ Wales
– Molecular Physics
(2018)
116,
2954
Mutational Basin-Hopping: Combined Structure and Sequence Optimization for Biomolecules
K Röder, DJ Wales
– Journal of Physical Chemistry Letters
(2018)
9,
6169
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Research Group

Research Interest Groups

Telephone number

01223 336354

Email address

dw34@cam.ac.uk