Department of Chemistry

portrait of Professor Shankar Balasubramanian FMedSci FRS

Professor Shankar Balasubramanian FMedSci FRS

Trinity College

Groups: Balasubramanian group website

Telephone: 01223 336347

E-mail: sb10031@cam.ac.uk


General


Nucleic acids are fundamental to life. Our research is focused on the chemical biology of nucleic acids, and employs the principles of chemistry and the molecular sciences to address questions of importance in biology and medicine. Projects are inherently interdisciplinary and will provide scope for a diversity of intellectual and experimental approaches that include: organic synthesis, biophysics, molecular and cellular biology and genomics. Our scientific goals are problem-driven, which constantly raises the need to invent new methodology.

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

A major interest is to elucidate and manipulate mechanisms that control the expression of genes (either transcription, or translation). We are particularly interested in the role of non-canonical nucleic acid structures that control gene expression (e.g. G-quadruplexes, micro RNA and RNA structures in the 5' untranslated regions of mRNAs). Our goal is to design and synthesise small organic molecules that target such structures and alter the expression of certain genes of interest. Such small molecule gene regulators are valuable tools to study mechanisms in biology and will also open up new approaches for therapeutics and molecular medicine, particularly for diseases characterized by aberrant expression of certain genes (e.g. various cancers).

Our fundamental science will inevitably create opportunities for translation and commercialisation. One such example was our invention (with Professor David Klenerman) of new DNA sequencing technology ("Solexa sequencing") that was commercialised as a Cambridge University spinout company (now part of Illumina Inc.) and is used routinely for applications in genomics, including human genome sequencing. 

To hear Shankar Balasubramanian discuss some of the group's research click here:

 http://www.sms.cam.ac.uk/media/1111642 

Publications

Quantitative visualization of DNA G-quadruplex structures in human cells.
G Biffi, D Tannahill, J McCafferty, S Balasubramanian - Nature Chemistry (2013) 5, 182
(DOI: 10.1038/nchem.1548)
Downregulation of androgen receptor transcription by promoter g-quadruplex stabilization as a potential alternative treatment for castrate-resistant prostate cancer.
T Mitchell, A Ramos-Montoya, M Di Antonio, P Murat, S Ohnmacht, M Micco, S Jurmeister, L Fryer, S Balasubramanian, S Neidle, DE Neal - Biochemistry (2013) 52, 1429
(DOI: 10.1021/bi301349c)
An acetylene-bridged 6,8-purine dimer as a fluorescent switch-on probe for parallel G-quadruplexes
M Nikan, M Di Antonio, K Abecassis, K McLuckie, S Balasubramanian - Angew Chem Int Ed Engl (2013) 52, 1428
(DOI: 10.1002/anie.201207075)
An RNA hairpin to g-quadruplex conformational transition
A Bugaut, P Murat, S Balasubramanian - Journal of the American Chemical Society (2012) 134, 19953
(DOI: 10.1021/ja308665g)
The kinetics and folding pathways of intramolecular G-quadruplex nucleic acids.
AYQ Zhang, S Balasubramanian - Journal of the American Chemical Society (2012) 134, 19297
(DOI: 10.1021/ja309851t)
Selective RNA versus DNA G-quadruplex targeting by situ click chemistry
M Di Antonio, G Biffi, A Mariani, E-A Raiber, R Rodriguez, S Balasubramanian - Angew Chem Int Ed Engl (2012) 51, 11073
(DOI: 10.1002/anie.201206281)
Pyridostatin analogues promote telomere dysfunction and long-term growth inhibition in human cancer cells.
S Müller, DA Sanders, M Di Antonio, S Matsis, J-F Riou, R Rodriguez, S Balasubramanian - Organic and Biomolecular Chemistry (2012) 10, 6537
(DOI: 10.1039/c2ob25830g)
Genome-wide distribution of 5-formylcytosine in ES cells is associated with transcription and depends on thymine DNA glycosylase
E-A Raiber, D Beraldi, G Ficz, H Burgess, MR Branco, P Murat, D Oxley, MJ Booth, W Reik, S Balasubramanian - Genome Biol (2012) 13, R69
(DOI: 10.1186/gb-2012-13-8-r69)
An Intramolecular G-Quadruplex Structure Is Required for Binding of Telomeric Repeat-Containing RNA to the Telomeric Protein TRF2
G Biffi, D Tannahill, S Balasubramanian - Journal of the American Chemical Society (2012) 134, 11974
(DOI: 10.1021/ja305734x)
5′-UTR RNA G-quadruplexes: Translation regulation and targeting
A Bugaut, S Balasubramanian - Nucleic Acids Research (2012) 40, 4727
(DOI: 10.1093/nar/gks068)

 

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Funding