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Yusuf Hamied Department of Chemistry

 

Herchel Smith Professor of Medicinal Chemistry

Nucleic acids are fundamental to life. Our research is focused on the chemical biology of nucleic acids, and employs the principles of chemistry and the molecular sciences to address questions of importance in biology and medicine. Projects are inherently interdisciplinary and will provide scope for a diversity of intellectual and experimental approaches that include: organic synthesis, biophysics, molecular and cellular biology and genomics. Our scientific goals are problem-driven, which constantly raises the need to invent new methodology.

 

A major interest is to elucidate and manipulate mechanisms that control the expression of genes (either transcription, or translation). We are particularly interested in the role of non-canonical nucleic acid structures that control gene expression (e.g. G-quadruplexes, micro RNA and RNA structures in the 5' untranslated regions of mRNAs). Our goal is to design and synthesise small organic molecules that target such structures and alter the expression of certain genes of interest. Such small molecule gene regulators are valuable tools to study mechanisms in biology and will also open up new approaches for therapeutics and molecular medicine, particularly for diseases characterized by aberrant expression of certain genes (e.g. various cancers).

Our fundamental science will inevitably create opportunities for translation and commercialisation. One such example was our invention (with Professor David Klenerman) of new DNA sequencing technology ("Solexa sequencing") that was commercialised as a Cambridge University spinout company (now part of Illumina Inc.) and is used routinely for applications in genomics, including human genome sequencing. 

Hear Shankar Balasubramanian discuss some of the group's research.

Watch Professor Balasubramanian discuss his research

Take a tour of the Balasubramanian Lab

Publications

Triarylpyridines: a versatile small molecule scaffold for G-quadruplex recognition
ZAE Waller, PS Shirude, R Rodriguez, S Balasubramanian
– Chemical communications (Cambridge, England)
(2008)
1467
A sequence-independent study of the influence of short loop lengths on the stability and topology of intramolecular DNA G-quadruplexes.
A Bugaut, S Balasubramanian
– Biochemistry
(2007)
47,
689
Trisubstituted isoalloxazines as a new class of G-quadruplex binding ligands: Small molecule regulation of c-kit oncogene expression
M Bejugam, S Sewitz, PS Shirude, R Rodriguez, R Shahid, S Balasubramanian
– J Am Chem Soc
(2007)
129,
12926
Macrocyclic and Helical Oligoamides as a New Class of G-Quadruplex Ligands
PS Shirude, ER Gillies, S Ladame, F Godde, K Shin-Ya, I Huc, S Balasubramanian
– Journal of the American Chemical Society
(2007)
129,
11890
ORGN 41-Quinoline oligoamide macrocycle: Selective G quadruplex binding ligand
PS Shirude, E Gillies, S Ladame, F Godde, I Huc, B Okumus, C Joo, S Balasubramanian
– ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY
(2007)
234,
Ligand‐Driven G‐Quadruplex Conformational Switching By Using an Unusual Mode of Interaction
R Rodriguez, GD Pantoş, DPN Gonçalves, JKM Sanders, S Balasubramanian
– Angewandte Chemie (International ed. in English)
(2007)
46,
5405
Single-molecule conformational analysis of G-quadruplex formation in the promoter DNA duplex of the proto-oncogene C-kit
PS Shirude, B Okumus, L Ying, T Ha, S Balasubramanian
– Journal of the American Chemical Society
(2007)
129,
7484
An RNA G-quadruplex in the 5' UTR of the NRAS proto-oncogene modulates translation.
S Kumari, A Bugaut, JL Huppert, S Balasubramanian
– Nat Chem Biol
(2007)
3,
218
A Simple Nanomixer for Single‐Molecule Kinetics Measurements
SS White, S Balasubramanian, D Klenerman, L Ying
– Angewandte Chemie (International ed. in English)
(2006)
45,
7540
A Simple Nanomixer for Single‐Molecule Kinetics Measurements
SS White, S Balasubramanian, D Klenerman, L Ying
– Angewandte Chemie
(2006)
118,
7702
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Research Group

Research Interest Group

Telephone number

01223 336347

Email address

sb10031@cam.ac.uk