Herchel Smith Professor of Medicinal Chemistry

Nucleic acids are fundamental to life. Our research is focused on the chemical biology of nucleic acids, and employs the principles of chemistry and the molecular sciences to address questions of importance in biology and medicine. Projects are inherently interdisciplinary and will provide scope for a diversity of intellectual and experimental approaches that include: organic synthesis, biophysics, molecular and cellular biology and genomics. Our scientific goals are problem-driven, which constantly raises the need to invent new methodology.

 

A major interest is to elucidate and manipulate mechanisms that control the expression of genes (either transcription, or translation). We are particularly interested in the role of non-canonical nucleic acid structures that control gene expression (e.g. G-quadruplexes, micro RNA and RNA structures in the 5' untranslated regions of mRNAs). Our goal is to design and synthesise small organic molecules that target such structures and alter the expression of certain genes of interest. Such small molecule gene regulators are valuable tools to study mechanisms in biology and will also open up new approaches for therapeutics and molecular medicine, particularly for diseases characterized by aberrant expression of certain genes (e.g. various cancers).

Our fundamental science will inevitably create opportunities for translation and commercialisation. One such example was our invention (with Professor David Klenerman) of new DNA sequencing technology ("Solexa sequencing") that was commercialised as a Cambridge University spinout company (now part of Illumina Inc.) and is used routinely for applications in genomics, including human genome sequencing. 

Hear Shankar Balasubramanian discuss some of the group's research.

Watch Professor Balasubramanian discuss his research

Take a tour of the Balasubramanian Lab

Publications

Ligand‐Driven G‐Quadruplex Conformational Switching By Using an Unusual Mode of Interaction
R Rodriguez, GD Pantoş, DPN Gonçalves, JKM Sanders, S Balasubramanian
Angew Chem Int Ed Engl
(2007)
46
Single-molecule conformational analysis of G-quadruplex formation in the promoter DNA duplex of the proto-oncogene C-kit
PS Shirude, B Okumus, L Ying, T Ha, S Balasubramanian
Journal of the American Chemical Society
(2007)
129
An RNA G-quadruplex in the 5' UTR of the NRAS proto-oncogene modulates translation.
S Kumari, A Bugaut, JL Huppert, S Balasubramanian
Nat Chem Biol
(2007)
3
A Simple Nanomixer for Single‐Molecule Kinetics Measurements
SS White, S Balasubramanian, D Klenerman, L Ying
Angewandte Chemie International Edition
(2006)
45
A Simple Nanomixer for Single‐Molecule Kinetics Measurements
SS White, S Balasubramanian, D Klenerman, L Ying
Angewandte Chemie
(2006)
118
Discovery of G-quadruplex stabilizing ligands through direct ELISA of a one-bead-one-compound library
JE Redman, S Ladame, AP Reszka, S Neidle, S Balasubramanian
Organic and Biomolecular Chemistry
(2006)
4
Determination of the fraction and stoichiometry of femtomolar levels of biomolecular complexes in an excess of monomer using single-molecule, two-color coincidence detection
A Orte, R Clarke, S Balasubramanian, D Klenerman
Anal Chem
(2006)
78
Structural analysis of the catalytic core of human telomerase RNA by FRET and molecular modeling.
G Gavory, MF Symmons, Y Krishnan Ghosh, D Klenerman, S Balasubramanian
Biochemistry
(2006)
45
Oxazole-based peptide macrocycles: a new class of G-quadruplex binding ligands.
K Jantos, R Rodriguez, S Ladame, PS Shirude, S Balasubramanian
J Am Chem Soc
(2006)
128
Tetramethylpyridiniumporphyrazines -: a new class of G-quadruplex inducing and stabilising ligands
DPN Gonçalves, R Rodriguez, S Balasubramanian, JKM Sanders
Chem. Commun.
(2006)

Research Group

Research Interest Group

Telephone number

01223 336347

Email address