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Yusuf Hamied Department of Chemistry

 

Professor of Chemical Physics

The self-assembly of complex mesoscopic structures, the folding of proteins, and the complicated phenomenology of glasses are all manifestations of the underlying potential energy surface (PES). In each of these fields related ideas have emerged to explain and predict chemical and physical properties in terms of the PES. In studies of clusters and glasses the PES itself is often investigated directly, whereas for proteins and other biomolecules it is also common to define free energy surfaces, as the figure below illustrates for lysozyme.

Applications of energy landscape theory in my group range from studies of tunnelling splitting patterns in small molecules to computer simulation of protein folding and misfolding, including aggregation of misfolded proteins. Other active research topics include global optimisation and investigation of how the thermodynamic and dynamic properties of glasses are related to the underlying PES.

Two recent advances are now providing new insight into larger systems. Discrete path sampling enables dynamical properties to be obtained efficiently, and is being used to calculate folding rates for proteins. Unexpected connections between dynamics and thermodynamics have also been revealed by the application of catastrophe theory to energy landscapes, and new results are now being obtained to characterize phase transitions.

Publications

Free energy landscapes of model peptides and proteins
DA Evans, DJ Wales
– J. Chem. Phys.
(2003)
118,
3891-3897
The favored cluster structures of model glass formers
JPK Doye, DJ Wales, FHM Zetterling, M Dzugutov
– The Journal of Chemical Physics
(2003)
118,
2792
Theoretical study of finite-temperature spectroscopy in CaAr$_n$ clusters. II. Time-dependent absorption spectra
F Calvo, F Spiegelman, DJ Wales
– J. Chem. Phys.
(2003)
118,
8754-8762
Energy Landscapes
DJ Wales
(2003)
Stationary points and dynamics in high-dimensional systems
DJ Wales, JPK Doye
– J. Chem. Phys.
(2003)
119,
12409-12416
Exploring energy landscapes with Monte Carlo methods
DJ Wales, J Hernandez-Rojas
– MONTE CARLO METHOD IN THE PHYSICAL SCIENCES
(2003)
690,
334
The free energy landscape and dynamics of met-enkephalin
DA Evans, DJ Wales
– J. Chem. Phys.
(2003)
119,
9947-9955
Ab initio study of rearrangements between C60 fullerenes
Y Kumeda, DJ Wales
– Chem. Phys. Lett.
(2003)
374,
125-131
The infrared and ultraviolet spectra of single conformations of methyl-capped dipeptides: N-acetyl tryptophan amide and N-acetyl tryptophan methyl amide
BC Dian, A Longarte, S Mercier, DA Evans, DJ Wales, TS Zwier
– Journal of Chemical Physics
(2002)
117,
10688
Equilibrium properties of clusters in the harmonic superposition approximation
F Calvo, JPK Doye, DJ Wales
– Chemical Physics Letters
(2002)
366,
176
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Research Group

Research Interest Groups

Telephone number

01223 336354

Email address

dw34@cam.ac.uk