Professor of Chemical Physics

The self-assembly of complex mesoscopic structures, the folding of proteins, and the complicated phenomenology of glasses are all manifestations of the underlying potential energy surface (PES). In each of these fields related ideas have emerged to explain and predict chemical and physical properties in terms of the PES. In studies of clusters and glasses the PES itself is often investigated directly, whereas for proteins and other biomolecules it is also common to define free energy surfaces, as the figure below illustrates for lysozyme.

Applications of energy landscape theory in my group range from studies of tunnelling splitting patterns in small molecules to computer simulation of protein folding and misfolding, including aggregation of misfolded proteins. Other active research topics include global optimisation and investigation of how the thermodynamic and dynamic properties of glasses are related to the underlying PES.

Two recent advances are now providing new insight into larger systems. Discrete path sampling enables dynamical properties to be obtained efficiently, and is being used to calculate folding rates for proteins. Unexpected connections between dynamics and thermodynamics have also been revealed by the application of catastrophe theory to energy landscapes, and new results are now being obtained to characterize phase transitions.

Publications

Geometric magic numbers of sodium clusters: Interpretation of the melting behaviour
EG Noya, JPK Doye, DJ Wales, A Aguado
Eur. Phys. J. D
(2007)
43
Thermodynamics and Kinetics of Aggregation for the GNNQQNY Peptide.
B Strodel, CS Whittleston, DJ Wales
J. Amer. Chem. Soc.
(2007)
129
Structure and dynamics of spherical crystals characterized for the Thomson problem.
DJ Wales, S Ulker
Physical Review B Condensed Matter and Materials Physics
(2006)
74
Thermodynamics of water octamer in a uniform electric field.
J Hernández-Rojas, BS González, T James, DJ Wales
The Journal of chemical physics
(2006)
125
Potential Energy and Free Energy Landscapes
DJ Wales, TV Bogdan
The journal of physical chemistry. B
(2006)
110
Correlation effects and super-Arrhenius diffusion in binary Lennard-Jones mixtures
VK de Souza, DJ Wales
Phys. Rev. B
(2006)
74
PHYS 50-Discrete path sampling analysis of mechanisms and rates
DJ Wales
ABSTR PAP AM CHEM S
(2006)
232
Coexistence in small inert gas clusters
DJ Wales
Mol. Phys.
(2006)
78
Structure and energetics of model symmetric and asymmetric decahedra
J Uppenbrink, DJ Wales, AI Kirkland, DA Jefferson, J Urban
Philosophical Magazine B Physics of Condensed Matter Statistical Mechanics Electronic Optical and Magnetic Properties
(2006)
65
Graph transformation method for calculating waiting times in Markov chains (16 pages).
SA Trygubenko, DJ Wales
Journal of Chemical Physics
(2006)
124

Research Group

Research Interest Groups

Telephone number

01223 336354

Email address