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Yusuf Hamied Department of Chemistry

 

Professor of Chemical Physics

The self-assembly of complex mesoscopic structures, the folding of proteins, and the complicated phenomenology of glasses are all manifestations of the underlying potential energy surface (PES). In each of these fields related ideas have emerged to explain and predict chemical and physical properties in terms of the PES. In studies of clusters and glasses the PES itself is often investigated directly, whereas for proteins and other biomolecules it is also common to define free energy surfaces, as the figure below illustrates for lysozyme.

Applications of energy landscape theory in my group range from studies of tunnelling splitting patterns in small molecules to computer simulation of protein folding and misfolding, including aggregation of misfolded proteins. Other active research topics include global optimisation and investigation of how the thermodynamic and dynamic properties of glasses are related to the underlying PES.

Two recent advances are now providing new insight into larger systems. Discrete path sampling enables dynamical properties to be obtained efficiently, and is being used to calculate folding rates for proteins. Unexpected connections between dynamics and thermodynamics have also been revealed by the application of catastrophe theory to energy landscapes, and new results are now being obtained to characterize phase transitions.

Publications

Thermodynamics of water octamer in a uniform electric field.
J Hernández-Rojas, BS González, T James, DJ Wales
– The Journal of chemical physics
(2006)
125,
224302
Potential energy and free energy landscapes
DJ Wales, TV Bogdan
– The journal of physical chemistry. B
(2006)
110,
20765
Correlation effects and super-Arrhenius diffusion in binary Lennard-Jones mixtures
VK de Souza, DJ Wales
– Physical Review B
(2006)
74,
134202
PHYS 50-Discrete path sampling analysis of mechanisms and rates
DJ Wales
– ABSTR PAP AM CHEM S
(2006)
232,
Coexistence in small inert gas clusters
DJ WALES
– Mol. Phys.
(2006)
78,
151
Structure and energetics of model symmetric and asymmetric decahedra
J UPPENBRINK, DJ WALES, AI KIRKLAND, DA JEFFERSON, J URBAN
– Philosophical Magazine B Physics of Condensed Matter Statistical Mechanics Electronic Optical and Magnetic Properties
(2006)
65,
1079
Graph transformation method for calculating waiting times in Markov chains
SA Trygubenko, DJ Wales
– J. Chem. Phys.
(2006)
124,
234110
Global potential energy minima of C60(H2O)n clusters
J Hernández-Rojas, J Bretón, JM Gomez Llorente, DJ Wales
– The journal of physical chemistry. B
(2006)
110,
13357
Kinetic analysis of discrete path sampling stationary point databases
SA Trygubenko, DJ Wales
– Molecular Physics
(2006)
104,
1497
Theory of C2Hx species on Pt{110}(1 × 2): Structure, stability, and thermal chemistry
AT Anghel, SJ Jenkins, DJ Wales, DA King
– The journal of physical chemistry. B
(2006)
110,
4147
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Research Group

Research Interest Groups

Telephone number

01223 336354

Email address

dw34@cam.ac.uk