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Yusuf Hamied Department of Chemistry

 

Professor of Chemical Physics

The self-assembly of complex mesoscopic structures, the folding of proteins, and the complicated phenomenology of glasses are all manifestations of the underlying potential energy surface (PES). In each of these fields related ideas have emerged to explain and predict chemical and physical properties in terms of the PES. In studies of clusters and glasses the PES itself is often investigated directly, whereas for proteins and other biomolecules it is also common to define free energy surfaces, as the figure below illustrates for lysozyme.

Applications of energy landscape theory in my group range from studies of tunnelling splitting patterns in small molecules to computer simulation of protein folding and misfolding, including aggregation of misfolded proteins. Other active research topics include global optimisation and investigation of how the thermodynamic and dynamic properties of glasses are related to the underlying PES.

Two recent advances are now providing new insight into larger systems. Discrete path sampling enables dynamical properties to be obtained efficiently, and is being used to calculate folding rates for proteins. Unexpected connections between dynamics and thermodynamics have also been revealed by the application of catastrophe theory to energy landscapes, and new results are now being obtained to characterize phase transitions.

Publications

Nuclear quantum effects on the stability of cationic neon clusters
F Calvo, FY Naumkin, DJ Wales
– Chemical Physics Letters
(2012)
551,
38
Mode-specificity and transition state-specific energy redistribution in the chemisorption of CH 4 on Ni{100}
M Sacchi, DJ Wales, SJ Jenkins
– Physical Chemistry Chemical Physics
(2012)
14,
15879
Beryllium cluster cages endohedrally doped by hydrogen: H 2@Be n (8 ≤ n ≤ 14)
FY Naumkin, DJ Wales
– International Journal of Quantum Chemistry
(2012)
112,
3068
Quasi-Continuous Interpolation Scheme for Pathways between Distant Configurations.
DJ Wales, JM Carr
– Journal of chemical theory and computation
(2012)
8,
5020
Hydrogen trapped in Be n cluster cages: The atomic encapsulation option
FY Naumkin, DJ Wales
– Chemical Physics Letters
(2012)
545,
44
A Local Rigid Body Framework for Global Optimization of Biomolecules
H Kusumaatmaja, CS Whittleston, DJ Wales
– J Chem Theory Comput
(2012)
8,
5159
Chaotic dynamics near steep transition states
JR Green, TS Hofer, DJ Wales, RS Berry
– Molecular Physics
(2012)
110,
1839
Decoding the energy landscape: Extracting structure, dynamics and thermodynamics
DJ Wales
– Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences
(2012)
370,
2877
Bond-selective energy redistribution in the chemisorption of CH 3D and CD 3H on Pt{110}-(1×2): A first-principles molecular dynamics study
M Sacchi, DJ Wales, SJ Jenkins
– Computational and Theoretical Chemistry
(2012)
990,
144
Pinning Down the Water Hexamer
RJ Saykally, DJ Wales
– Science (New York, N.Y.)
(2012)
336,
814
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Research Group

Research Interest Groups

Telephone number

01223 336354

Email address

dw34@cam.ac.uk