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Yusuf Hamied Department of Chemistry

 

Professor of Chemical Physics

The self-assembly of complex mesoscopic structures, the folding of proteins, and the complicated phenomenology of glasses are all manifestations of the underlying potential energy surface (PES). In each of these fields related ideas have emerged to explain and predict chemical and physical properties in terms of the PES. In studies of clusters and glasses the PES itself is often investigated directly, whereas for proteins and other biomolecules it is also common to define free energy surfaces, as the figure below illustrates for lysozyme.

Applications of energy landscape theory in my group range from studies of tunnelling splitting patterns in small molecules to computer simulation of protein folding and misfolding, including aggregation of misfolded proteins. Other active research topics include global optimisation and investigation of how the thermodynamic and dynamic properties of glasses are related to the underlying PES.

Two recent advances are now providing new insight into larger systems. Discrete path sampling enables dynamical properties to be obtained efficiently, and is being used to calculate folding rates for proteins. Unexpected connections between dynamics and thermodynamics have also been revealed by the application of catastrophe theory to energy landscapes, and new results are now being obtained to characterize phase transitions.

Publications

Energy landscapes, structural topologies and rearrangement mechanisms in clusters of dipolar particles
JD Farrell, C Lines, JJ Shepherd, D Chakrabarti, MA Miller, DJ Wales
– Soft Matter
(2013)
9,
5407
Visualizing basins of attraction for different minimization algorithms.
D Asenjo, JD Stevenson, DJ Wales, D Frenkel
– The journal of physical chemistry. B
(2013)
117,
12717
Local frustration determines molecular and macroscopic helix structures.
CJ Forman, SN Fejer, D Chakrabarti, PD Barker, DJ Wales
– The Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces and Biophysical
(2013)
117,
7918
Communication: Certifying the potential energy landscape.
D Mehta, JD Hauenstein, DJ Wales
– J Chem Phys
(2013)
138,
171101
Defect Motifs for Constant Mean Curvature Surfaces
H Kusumaatmaja, DJ Wales
– Phys Rev Lett
(2013)
110,
165502
Symmetrisation schemes for global optimisation of atomic clusters.
MT Oakley, RL Johnston, DJ Wales
– Physical Chemistry Chemical Physics
(2013)
15,
3965
Designing a Bernal Spiral from Patchy Colloids
JWR Morgan, D Chakrabarti, N Dorsaz, DJ Wales
– ACS Nano
(2013)
7,
1246
Investigation of Terahertz Vibration–Rotation Tunneling Spectra for the Water Octamer
JO Richardson, DJ Wales, SC Althorpe, RP McLaughlin, MR Viant, O Shih, RJ Saykally
– Journal of Physical Chemistry A
(2013)
117,
6960
Hydrogen in Light-Metal Cage Assemblies: Towards a Nanofoam Storage
FY Naumkin, DJ Wales
– Progress in Theoretical Chemistry and Physics
(2013)
27,
211
Energy landscapes and tunneling splittings for water clusters
DJ Wales
– ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY
(2013)
246,
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Research Group

Research Interest Groups

Telephone number

01223 336354

Email address

dw34@cam.ac.uk