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Yusuf Hamied Department of Chemistry

 

Professor of Chemical Physics

The self-assembly of complex mesoscopic structures, the folding of proteins, and the complicated phenomenology of glasses are all manifestations of the underlying potential energy surface (PES). In each of these fields related ideas have emerged to explain and predict chemical and physical properties in terms of the PES. In studies of clusters and glasses the PES itself is often investigated directly, whereas for proteins and other biomolecules it is also common to define free energy surfaces, as the figure below illustrates for lysozyme.

Applications of energy landscape theory in my group range from studies of tunnelling splitting patterns in small molecules to computer simulation of protein folding and misfolding, including aggregation of misfolded proteins. Other active research topics include global optimisation and investigation of how the thermodynamic and dynamic properties of glasses are related to the underlying PES.

Two recent advances are now providing new insight into larger systems. Discrete path sampling enables dynamical properties to be obtained efficiently, and is being used to calculate folding rates for proteins. Unexpected connections between dynamics and thermodynamics have also been revealed by the application of catastrophe theory to energy landscapes, and new results are now being obtained to characterize phase transitions.

Publications

Decoupled Associative and Dissociative Processes in Strong yet Highly Dynamic Host-Guest Complexes.
EA Appel, F Biedermann, D Hoogland, J Del Barrio, MD Driscoll, S Hay, DJ Wales, OA Scherman
– J Am Chem Soc
(2017)
139,
12985
Energy landscapes for machine learning
AJ Ballard, R Das, S Martiniani, D Mehta, L Sagun, JD Stevenson, DJ Wales
– Phys Chem Chem Phys
(2017)
19,
12585
Improving Computational Predictions of Single-Stranded RNA Tetramers with Revised α/γ Torsional Parameters for the Amber Force Field
DJ Wales, I Yildirim
– The journal of physical chemistry. B
(2017)
121,
2989
Defining and quantifying frustration in the energy landscape: Applications to atomic and molecular clusters, biomolecules, jammed and glassy systems
VK de Souza, JD Stevenson, SP Niblett, JD Farrell, DJ Wales
– Journal of Chemical Physics
(2017)
146,
124103
Decoding heat capacity features from the energy landscape.
DJ Wales
– Physical review. E
(2017)
95,
030105
What Makes Telomeres Unique?
AK Sieradzan, P Krupa, DJ Wales
– The journal of physical chemistry. B
(2017)
121,
2207
Transforming the Energy Landscape of a Coiled-Coil Peptide via Point Mutations.
K Röder, DJ Wales
– Journal of chemical theory and computation
(2017)
13,
1468
Atomic clusters with addressable complexity.
DJ Wales
– Journal of Chemical Physics
(2017)
146,
054306
Dynamics and thermodynamics of the coronene octamer described by coarse-grained potentials.
J Hernández-Rojas, F Calvo, S Niblett, DJ Wales
– Phys Chem Chem Phys
(2017)
19,
1884
Probing helical transitions in a DNA duplex.
D Chakraborty, DJ Wales
– Physical chemistry chemical physics : PCCP
(2017)
19,
878
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Research Group

Research Interest Groups

Telephone number

01223 336354

Email address

dw34@cam.ac.uk