Herchel Smith Professor of Medicinal Chemistry

Nucleic acids are fundamental to life. Our research is focused on the chemical biology of nucleic acids, and employs the principles of chemistry and the molecular sciences to address questions of importance in biology and medicine. Projects are inherently interdisciplinary and will provide scope for a diversity of intellectual and experimental approaches that include: organic synthesis, biophysics, molecular and cellular biology and genomics. Our scientific goals are problem-driven, which constantly raises the need to invent new methodology.

 

A major interest is to elucidate and manipulate mechanisms that control the expression of genes (either transcription, or translation). We are particularly interested in the role of non-canonical nucleic acid structures that control gene expression (e.g. G-quadruplexes, micro RNA and RNA structures in the 5' untranslated regions of mRNAs). Our goal is to design and synthesise small organic molecules that target such structures and alter the expression of certain genes of interest. Such small molecule gene regulators are valuable tools to study mechanisms in biology and will also open up new approaches for therapeutics and molecular medicine, particularly for diseases characterized by aberrant expression of certain genes (e.g. various cancers).

Our fundamental science will inevitably create opportunities for translation and commercialisation. One such example was our invention (with Professor David Klenerman) of new DNA sequencing technology ("Solexa sequencing") that was commercialised as a Cambridge University spinout company (now part of Illumina Inc.) and is used routinely for applications in genomics, including human genome sequencing. 

Hear Shankar Balasubramanian discuss some of the group's research.

Watch Professor Balasubramanian discuss his research

Take a tour of the Balasubramanian Lab

Publications

Natural, modified DNA bases
MK Bilyard, S Becker, S Balasubramanian
Curr Opin Chem Biol
(2020)
57
A Spontaneous Ring Opening Reaction Leads to a Repair- Resistant T Oxidation Product in Genomic DNA
AB Sahakyan, A Mahtey, F Kawasaki, S Balasubramanian
ChemBioChem
(2019)
21
An Activatable Cancer-Targeted Hydrogen Peroxide Probe for Photoacoustic and Fluorescence Imaging
J Weber, L Bollepalli, AM Belenguer, MD Antonio, N De Mitri, J Joseph, S Balasubramanian, CA Hunter, SE Bohndiek
Cancer Research
(2019)
79
Unusual Activity of a Chlamydomonas TET/JBP Family Enzyme
L Aravind, S Balasubramanian, A Rao
Biochemistry
(2019)
58
The Structure and Function of DNA G-Quadruplexes.
S Balasubramanian, S Adhikari, J Spiegel
Trends in Chemistry
(2019)
2
Genetic interactions of G-quadruplexes in humans.
S Balasubramanian, K Zyner, M Di Antonio, S Adhikari, D Mulhearn, S Martinez Cuesta, D Tannahill, N Erard, G Hannon
eLife
(2019)
8
METTL1 Promotes let-7 MicroRNA Processing via m7G Methylation
L Pandolfini, I Barbieri, AJ Bannister, A Hendrick, B Andrews, N Webster, P Murat, P Mach, R Brandi, SC Robson, V Migliori, A Alendar, M d'Onofrio, S Balasubramanian, T Kouzarides
Mol Cell
(2019)
74
Correction to: RNA G-quadruplexes at upstream open reading frames cause DHX36- and DHX9-dependent translation of human mRNAs (Genome Biol (2018) 19 (229) DOI: 10.1186/s13059-018-1602-2)
P Murat, G Marsico, B Herdy, AT Ghanbarian, G Portella, S Balasubramanian
Genome Biol
(2019)
20
Sequencing abasic sites in DNA at single-nucleotide resolution
ZJ Liu, S Martínez Cuesta, P van Delft, S Balasubramanian
Nature chemistry
(2019)
11
Publisher Correction: DNA sequencing at 40: past, present and future (Nature, (2017), 550, 7676, (345-353), 10.1038/nature24286)
J Shendure, S Balasubramanian, GM Church, W Gilbert, J Rogers, JA Schloss, RH Waterston
Nature
(2019)
568

Research Group

Research Interest Group

Telephone number

01223 336347

Email address