Herchel Smith Professor of Medicinal Chemistry

Nucleic acids are fundamental to life. Our research is focused on the chemical biology of nucleic acids, and employs the principles of chemistry and the molecular sciences to address questions of importance in biology and medicine. Projects are inherently interdisciplinary and will provide scope for a diversity of intellectual and experimental approaches that include: organic synthesis, biophysics, molecular and cellular biology and genomics. Our scientific goals are problem-driven, which constantly raises the need to invent new methodology.

 

A major interest is to elucidate and manipulate mechanisms that control the expression of genes (either transcription, or translation). We are particularly interested in the role of non-canonical nucleic acid structures that control gene expression (e.g. G-quadruplexes, micro RNA and RNA structures in the 5' untranslated regions of mRNAs). Our goal is to design and synthesise small organic molecules that target such structures and alter the expression of certain genes of interest. Such small molecule gene regulators are valuable tools to study mechanisms in biology and will also open up new approaches for therapeutics and molecular medicine, particularly for diseases characterized by aberrant expression of certain genes (e.g. various cancers).

Our fundamental science will inevitably create opportunities for translation and commercialisation. One such example was our invention (with Professor David Klenerman) of new DNA sequencing technology ("Solexa sequencing") that was commercialised as a Cambridge University spinout company (now part of Illumina Inc.) and is used routinely for applications in genomics, including human genome sequencing. 

Hear Shankar Balasubramanian discuss some of the group's research.

Watch Professor Balasubramanian discuss his research

Take a tour of the Balasubramanian Lab

Publications

Early detection of cancer
D Crosby, S Bhatia, KM Brindle, LM Coussens, C Dive, M Emberton, S Esener, RC Fitzgerald, SS Gambhir, P Kuhn, TR Rebbeck, S Balasubramanian
Science (New York, N.Y.)
(2022)
375
Single-cell mapping of DNA G-quadruplex structures in human cancer cells (vol 11, 23641, 2021)
WWI Hui, A Simeone, KG Zyner, D Tannahill, S Balasubramanian
Scientific Reports
(2022)
12
G-quadruplex DNA structures in human stem cells and differentiation
KG Zyner, A Simeone, SM Flynn, C Doyle, G Marsico, S Adhikari, G Portella, D Tannahill, S Balasubramanian
Nature Communications
(2022)
13
G-quadruplex DNA structures in human stem cells and differentiation.
KG Zyner, A Simeone, SM Flynn, C Doyle, G Marsico, S Adhikari, G Portella, D Tannahill, S Balasubramanian
Nature communications
(2022)
13
Three-dimensional imaging mass cytometry for highly multiplexed molecular and cellular mapping of tissues and the tumor microenvironment.
L Kuett, R Catena, A Özcan, A Plüss, HR Ali, MA Sa’d, S Alon, S Aparicio, G Battistoni, S Balasubramanian, R Becker, B Bodenmiller, ES Boyden, D Bressan, A Bruna, M Burger, C Caldas, M Callari, IG Cannell, H Casbolt, N Chornay, Y Cui, A Dariush, K Dinh, A Emenari, Y Eyal-Lubling, J Fan, A Fatemi, E Fisher, EA González-Solares, C González-Fernández, D Goodwin, W Greenwood, F Grimaldi, GJ Hannon, S Harris, C Jauset, JA Joyce, ED Karagiannis, T Kovačević, R Kunes, AK Yoldaş, D Lai, E Laks, H Lee, M Lee, G Lerda, Y Li, A McPherson, N Millar, CM Mulvey, I Nugent, CH O’Flanagan, M Paez-Ribes, I Pearsall, F Qosaj, AJ Roth, OM Rueda, T Ruiz, K Sawicka, LA Sepúlveda, SP Shah, A Shea, A Sinha, A Smith, S Tavaré, S Tietscher, I Vázquez-García, SL Vogl, NA Walton, AT Wassie, SS Watson, J Weselak, SA Wild, E Williams, J Windhager, C Xia, P Zheng, X Zhuang, P Schraml, H Moch, N de Souza, B Bodenmiller
Nature cancer
(2021)
3
Single-cell mapping of DNA G-quadruplex structures in human cancer cells
WWI Hui, A Simeone, KG Zyner, D Tannahill, S Balasubramanian
Sci Rep
(2021)
11
RNA G-quadruplex structures control ribosomal protein production.
D Varshney, SM Cuesta, B Herdy, UB Abdullah, D Tannahill, S Balasubramanian
Sci Rep
(2021)
11
Chemical profiling of DNA G-quadruplex-interacting proteins in live cells
S Balasubramanian, X Zhang, J Spiegel, S Adhikari, S Martinez Cuesta
Nature Chemistry
(2021)
13
Reduced Bisulfite Sequencing: Quantitative Base-Resolution Sequencing of 5-Formylcytosine
MJ Booth, S Balasubramanian
Methods in Molecular Biology
(2021)
2272
Promoter G-quadruplex folding precedes transcription and is controlled by chromatin
J Shen, D Varshney, A Simeone, X Zhang, S Adhikari, D Tannahill, S Balasubramanian
Genome biology
(2021)
22

Research Group

Research Interest Group

Telephone number

01223 336347

Email address