Herchel Smith Professor of Medicinal Chemistry

Nucleic acids are fundamental to life. Our research is focused on the chemical biology of nucleic acids, and employs the principles of chemistry and the molecular sciences to address questions of importance in biology and medicine. Projects are inherently interdisciplinary and will provide scope for a diversity of intellectual and experimental approaches that include: organic synthesis, biophysics, molecular and cellular biology and genomics. Our scientific goals are problem-driven, which constantly raises the need to invent new methodology.

 

A major interest is to elucidate and manipulate mechanisms that control the expression of genes (either transcription, or translation). We are particularly interested in the role of non-canonical nucleic acid structures that control gene expression (e.g. G-quadruplexes, micro RNA and RNA structures in the 5' untranslated regions of mRNAs). Our goal is to design and synthesise small organic molecules that target such structures and alter the expression of certain genes of interest. Such small molecule gene regulators are valuable tools to study mechanisms in biology and will also open up new approaches for therapeutics and molecular medicine, particularly for diseases characterized by aberrant expression of certain genes (e.g. various cancers).

Our fundamental science will inevitably create opportunities for translation and commercialisation. One such example was our invention (with Professor David Klenerman) of new DNA sequencing technology ("Solexa sequencing") that was commercialised as a Cambridge University spinout company (now part of Illumina Inc.) and is used routinely for applications in genomics, including human genome sequencing. 

Hear Shankar Balasubramanian discuss some of the group's research.

Watch Professor Balasubramanian discuss his research

Take a tour of the Balasubramanian Lab

Publications

A Sequence-Independent Analysis of the Loop Length Dependence of Intramolecular RNA G-Quadruplex Stability and Topology
AYQ Zhang, A Bugaut, S Balasubramanian
Biochemistry
(2011)
50
Sequencing nucleic acids: from chemistry to medicine
S Balasubramanian
Chemical communications (Cambridge, England)
(2011)
47
Rudimentary G-quadruplex-based telomere capping in Saccharomyces cerevisiae
JS Smith, Q Chen, LA Yatsunyk, JM Nicoludis, MS Garcia, R Kranaster, S Balasubramanian, D Monchaud, MP Teulade-Fichou, L Abramowitz, DC Schultz, FB Johnson
Nature Structural and Molecular Biology
(2011)
18
Targeting G-quadruplexes in gene promoters: A novel anticancer strategy?
S Balasubramanian, LH Hurley, S Neidle
Nature reviews. Drug discovery
(2011)
10
Synthesis and Binding Studies of Novel Diethynyl-Pyridine Amides with Genomic Promoter DNA G-Quadruplexes
J Dash, ZAE Waller, GD Pantoş, S Balasubramanian
Chemistry - A European Journal
(2011)
17
G-Quadruplex-Binding Benzo[a]phenoxazines Down-Regulate c-KIT Expression in Human Gastric Carcinoma Cells
KIE McLuckie, ZAE Waller, DA Sanders, D Alves, R Rodriguez, J Dash, GJ McKenzie, AR Venkitaraman, S Balasubramanian
Journal of the American Chemical Society
(2011)
133
Diversity of human copy number variation and multicopy genes
PH Sudmant, JO Kitzman, F Antonacci, C Alkan, M Malig, A Tsalenko, N Sampas, L Bruhn, J Shendure, 1000 Genomes Project, EE Eichler
Science (New York, N.Y.)
(2010)
330
Correction to Targeting the c-Kit Promoter G-quadruplexes with 6-Substituted Indenoisoquinolines
M Bejugam, M Gunaratnam, S Müller, DA Sanders, S Sewitz, JA Fletcher, S Neidle, S Balasubramanian
ACS Medicinal Chemistry Letters
(2010)
1
Small-molecule-mediated G-quadruplex isolation from human cells.
S Müller, S Kumari, R Rodriguez, S Balasubramanian
Nat Chem
(2010)
2
Distinct functions of maternal and somatic Pat1 protein paralogs
A Marnef, M Maldonado, A Bugaut, S Balasubramanian, M Kress, D Weil, N Standart
RNA (New York, N.Y.)
(2010)
16

Research Group

Research Interest Group

Telephone number

01223 336347

Email address