Herchel Smith Professor of Medicinal Chemistry

Nucleic acids are fundamental to life. Our research is focused on the chemical biology of nucleic acids, and employs the principles of chemistry and the molecular sciences to address questions of importance in biology and medicine. Projects are inherently interdisciplinary and will provide scope for a diversity of intellectual and experimental approaches that include: organic synthesis, biophysics, molecular and cellular biology and genomics. Our scientific goals are problem-driven, which constantly raises the need to invent new methodology.

 

A major interest is to elucidate and manipulate mechanisms that control the expression of genes (either transcription, or translation). We are particularly interested in the role of non-canonical nucleic acid structures that control gene expression (e.g. G-quadruplexes, micro RNA and RNA structures in the 5' untranslated regions of mRNAs). Our goal is to design and synthesise small organic molecules that target such structures and alter the expression of certain genes of interest. Such small molecule gene regulators are valuable tools to study mechanisms in biology and will also open up new approaches for therapeutics and molecular medicine, particularly for diseases characterized by aberrant expression of certain genes (e.g. various cancers).

Our fundamental science will inevitably create opportunities for translation and commercialisation. One such example was our invention (with Professor David Klenerman) of new DNA sequencing technology ("Solexa sequencing") that was commercialised as a Cambridge University spinout company (now part of Illumina Inc.) and is used routinely for applications in genomics, including human genome sequencing. 

Hear Shankar Balasubramanian discuss some of the group's research.

Watch Professor Balasubramanian discuss his research

Take a tour of the Balasubramanian Lab

Publications

An Acetylene-Bridged 6,8-Purine Dimer as a Fluorescent Switch-On Probe for Parallel G-Quadruplexes
M Nikan, M Di Antonio, K Abecassis, K McLuckie, S Balasubramanian
Angew Chem Int Ed Engl
(2012)
52
An RNA hairpin to G-quadruplex conformational transition.
A Bugaut, P Murat, S Balasubramanian
Journal of the American Chemical Society
(2012)
134
The kinetics and folding pathways of intramolecular G-quadruplex nucleic acids
AYQ Zhang, S Balasubramanian
J Am Chem Soc
(2012)
134
Selective RNA versus DNA G-quadruplex targeting by in situ click chemistry.
M Di Antonio, G Biffi, A Mariani, E-A Raiber, R Rodriguez, S Balasubramanian
Angewandte Chemie (International ed. in English)
(2012)
51
Genome-wide distribution of 5-formylcytosine in embryonic stem cells is associated with transcription and depends on thymine DNA glycosylase.
E-A Raiber, D Beraldi, G Ficz, HE Burgess, MR Branco, P Murat, D Oxley, MJ Booth, W Reik, S Balasubramanian
Genome Biology
(2012)
13
Pyridostatin analogues promote telomere dysfunction and long-term growth inhibition in human cancer cells.
S Müller, DA Sanders, M Di Antonio, S Matsis, J-F Riou, R Rodriguez, S Balasubramanian
Organic and Biomolecular Chemistry
(2012)
10
An intramolecular G-quadruplex structure is required for binding of telomeric repeat-containing RNA to the telomeric protein TRF2
G Biffi, D Tannahill, S Balasubramanian
J Am Chem Soc
(2012)
134
Quantitative sequencing of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution
MJ Booth, MR Branco, G Ficz, D Oxley, F Krueger, W Reik, S Balasubramanian
Science
(2012)
336
Comparative Structural Effects of HIV-1 Gag and Nucleocapsid Proteins in Binding to and Unwinding of the Viral RNA Packaging Signal
NM Bell, JC Kenyon, S Balasubramanian, AML Lever
Biochemistry
(2012)
51
5′-UTR RNA G-quadruplexes: Translation regulation and targeting
A Bugaut, S Balasubramanian
Nucleic Acids Research
(2012)
40

Research Group

Research Interest Group

Telephone number

01223 336347

Email address