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Yusuf Hamied Department of Chemistry

 

Herchel Smith Professor of Medicinal Chemistry

Nucleic acids are fundamental to life. Our research is focused on the chemical biology of nucleic acids, and employs the principles of chemistry and the molecular sciences to address questions of importance in biology and medicine. Projects are inherently interdisciplinary and will provide scope for a diversity of intellectual and experimental approaches that include: organic synthesis, biophysics, molecular and cellular biology and genomics. Our scientific goals are problem-driven, which constantly raises the need to invent new methodology.

 

A major interest is to elucidate and manipulate mechanisms that control the expression of genes (either transcription, or translation). We are particularly interested in the role of non-canonical nucleic acid structures that control gene expression (e.g. G-quadruplexes, micro RNA and RNA structures in the 5' untranslated regions of mRNAs). Our goal is to design and synthesise small organic molecules that target such structures and alter the expression of certain genes of interest. Such small molecule gene regulators are valuable tools to study mechanisms in biology and will also open up new approaches for therapeutics and molecular medicine, particularly for diseases characterized by aberrant expression of certain genes (e.g. various cancers).

Our fundamental science will inevitably create opportunities for translation and commercialisation. One such example was our invention (with Professor David Klenerman) of new DNA sequencing technology ("Solexa sequencing") that was commercialised as a Cambridge University spinout company (now part of Illumina Inc.) and is used routinely for applications in genomics, including human genome sequencing. 

Hear Shankar Balasubramanian discuss some of the group's research.

Watch Professor Balasubramanian discuss his research

Take a tour of the Balasubramanian Lab

Publications

G-quadruplex structures are stable and detectable in human genomic DNA.
EYN Lam, D Beraldi, D Tannahill, S Balasubramanian
– Nature Communications
(2013)
4,
1796
Downregulation of androgen receptor transcription by promoter G-quadruplex stabilization as a potential alternative treatment for castrate-resistant prostate cancer
T Mitchell, A Ramos-Montoya, M Di Antonio, P Murat, S Ohnmacht, M Micco, S Jurmeister, L Fryer, S Balasubramanian, S Neidle, DE Neal
– Biochemistry
(2013)
52,
1429
Genome-wide mapping of FOXM1 binding reveals co-binding with estrogen receptor alpha in breast cancer cells.
DA Sanders, CS Ross-Innes, D Beraldi, JS Carroll, S Balasubramanian
– Genome Biol
(2013)
14,
r6
Quantitative visualization of DNA G-quadruplex structures in human cells.
G Biffi, D Tannahill, J McCafferty, S Balasubramanian
– Nature chemistry
(2013)
5,
182
An Acetylene-Bridged 6,8-Purine Dimer as a Fluorescent Switch-On Probe for Parallel G-Quadruplexes
M Nikan, M Di Antonio, K Abecassis, K McLuckie, S Balasubramanian
– Angew Chem Int Ed Engl
(2012)
52,
1428
An RNA hairpin to g-quadruplex conformational transition
A Bugaut, P Murat, S Balasubramanian
– J Am Chem Soc
(2012)
134,
19953
The Kinetics and Folding Pathways of Intramolecular G‑Quadruplex Nucleic Acids
AYQ Zhang, S Balasubramanian
– Journal of the American Chemical Society
(2012)
134,
19297
Selective RNA Versus DNA G‐Quadruplex Targeting by In Situ Click Chemistry
M Di Antonio, G Biffi, A Mariani, E-A Raiber, R Rodriguez, S Balasubramanian
– Angew Chem Int Ed Engl
(2012)
51,
11073
Genome-wide distribution of 5-formylcytosine in embryonic stem cells is associated with transcription and depends on thymine DNA glycosylase.
E-A Raiber, D Beraldi, G Ficz, HE Burgess, MR Branco, P Murat, D Oxley, MJ Booth, W Reik, S Balasubramanian
– Genome Biol
(2012)
13,
R69
An intramolecular G-quadruplex structure is required for binding of telomeric repeat-containing RNA to the telomeric protein TRF2
G Biffi, D Tannahill, S Balasubramanian
– Journal of the American Chemical Society
(2012)
134,
11974
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Research Group

Research Interest Group

Telephone number

01223 336347

Email address

sb10031@cam.ac.uk