skip to content

Yusuf Hamied Department of Chemistry

 

Professor of Chemical Physics

The self-assembly of complex mesoscopic structures, the folding of proteins, and the complicated phenomenology of glasses are all manifestations of the underlying potential energy surface (PES). In each of these fields related ideas have emerged to explain and predict chemical and physical properties in terms of the PES. In studies of clusters and glasses the PES itself is often investigated directly, whereas for proteins and other biomolecules it is also common to define free energy surfaces, as the figure below illustrates for lysozyme.

Applications of energy landscape theory in my group range from studies of tunnelling splitting patterns in small molecules to computer simulation of protein folding and misfolding, including aggregation of misfolded proteins. Other active research topics include global optimisation and investigation of how the thermodynamic and dynamic properties of glasses are related to the underlying PES.

Two recent advances are now providing new insight into larger systems. Discrete path sampling enables dynamical properties to be obtained efficiently, and is being used to calculate folding rates for proteins. Unexpected connections between dynamics and thermodynamics have also been revealed by the application of catastrophe theory to energy landscapes, and new results are now being obtained to characterize phase transitions.

Publications

Topography of potential-energy surfaces for Van der Waals complexes
PLA POPELIER, AJ STONE, DJ WALES
– Faraday Discussions
(1994)
97,
243
Coexistence in finite systems
DJ Wales, RS Berry
– Physical review letters
(1994)
73,
2875-2878
Rearrangements in model face-centered-cubic solids
DJ Wales, J Uppenbrink
– Phys Rev B Condens Matter
(1994)
50,
12342
Rearrangements of 55-atom Lennard-Jones and (C60)55 clusters
DJ WALES
– Journal of Chemical Physics
(1994)
101,
3750
Free energy barriers to melting in atomic clusters
RM LYNDENBELL, DJ WALES
– The Journal of Chemical Physics
(1994)
101,
1460-1476
Transition vector symmetry and the internal pseudo-rotation and inversion paths of CIF4 +
RM MINYAEV, DJ WALES
– Journal of the Chemical Society, Faraday Transactions
(1994)
90,
1831
Gradient-line reaction paths for 1,2, H shift reactions in phosphinonitrene and formaldehyde, and H2 elimination from formaldehyde
RM MINYAEV, DJ WALES
– Physical Chemistry Chemical Physics
(1994)
90,
1839
Electronic structure of small silicon clusters
DJ Wales
– \pra
(1994)
49,
2195
Gradient line reaction path of HF addition to ethylene
RM MINYAEV, DJ WALES
– Chemical Physics Letters
(1994)
218,
413
Ab initio calculation of molecular structure by expansion of the electron density
DJ WALES
– Chemical Physics Letters
(1994)
217,
302-310
  • <
  • 60 of 69
  • >

Research Group

Research Interest Groups

Telephone number

01223 336354

Email address

dw34@cam.ac.uk