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Yusuf Hamied Department of Chemistry

 

Professor of Chemical Physics

The self-assembly of complex mesoscopic structures, the folding of proteins, and the complicated phenomenology of glasses are all manifestations of the underlying potential energy surface (PES). In each of these fields related ideas have emerged to explain and predict chemical and physical properties in terms of the PES. In studies of clusters and glasses the PES itself is often investigated directly, whereas for proteins and other biomolecules it is also common to define free energy surfaces, as the figure below illustrates for lysozyme.

Applications of energy landscape theory in my group range from studies of tunnelling splitting patterns in small molecules to computer simulation of protein folding and misfolding, including aggregation of misfolded proteins. Other active research topics include global optimisation and investigation of how the thermodynamic and dynamic properties of glasses are related to the underlying PES.

Two recent advances are now providing new insight into larger systems. Discrete path sampling enables dynamical properties to be obtained efficiently, and is being used to calculate folding rates for proteins. Unexpected connections between dynamics and thermodynamics have also been revealed by the application of catastrophe theory to energy landscapes, and new results are now being obtained to characterize phase transitions.

Publications

The dynamics of structural transitions in sodium chloride clusters
JPK Doye, DJ Wales
– J. Chem. Phys.
(1999)
111,
11070-11079
Structural relaxation in Morse clusters: Energy landscapes
MA Miller, JPK Doye, DJ Wales
– The Journal of Chemical Physics
(1999)
110,
328
Rearrangements and tunneling splittings of protonated water trimer
DJ Wales
– J. Chem. Phys.
(1999)
111,
8429-8437
Global optimization of clusters, crystals and biomolecules
DJ Wales, HA Scheraga
– Science
(1999)
285,
1368-1372
Rearrangements of Water Dimer and Hexamer
DJ Wales
(1999)
86-110
Structural transitions and global minima of sodium chloride clusters
JPK Doye, DJ Wales
– \prb
(1999)
59,
2292-2300
Rydberg excitations in rare gas clusters: structure and electronic spectra of Ar-n(*) (3 <= n <= 25)
FY Naumkin, DJ Wales
– Mol. Phys.
(1999)
96,
1295-1304
The effect of the range of the potential on the structure and stability of simple liquids: From clusters to bulk, from sodium to C60
JPK Doye, DJ Wales
– Journal of Physics B: Atomic, Molecular and Optical Physics
(1999)
29,
4859
Rearrangements and tunneling splittings of protonated water dimer
DJ Wales
– J. Chem. Phys.
(1999)
110,
10403-10409
Local interpretation of chaotic dynamics in a many-body classical Hamiltonian system (Ar3)
DJ WALES, RS BERRY
– Journal of Physics B Atomic Molecular and Optical Physics
(1999)
24,
L351
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Research Group

Research Interest Groups

Telephone number

01223 336354

Email address

dw34@cam.ac.uk