skip to content

Yusuf Hamied Department of Chemistry

 

Professor of Chemical Physics

The self-assembly of complex mesoscopic structures, the folding of proteins, and the complicated phenomenology of glasses are all manifestations of the underlying potential energy surface (PES). In each of these fields related ideas have emerged to explain and predict chemical and physical properties in terms of the PES. In studies of clusters and glasses the PES itself is often investigated directly, whereas for proteins and other biomolecules it is also common to define free energy surfaces, as the figure below illustrates for lysozyme.

Applications of energy landscape theory in my group range from studies of tunnelling splitting patterns in small molecules to computer simulation of protein folding and misfolding, including aggregation of misfolded proteins. Other active research topics include global optimisation and investigation of how the thermodynamic and dynamic properties of glasses are related to the underlying PES.

Two recent advances are now providing new insight into larger systems. Discrete path sampling enables dynamical properties to be obtained efficiently, and is being used to calculate folding rates for proteins. Unexpected connections between dynamics and thermodynamics have also been revealed by the application of catastrophe theory to energy landscapes, and new results are now being obtained to characterize phase transitions.

Publications

Energy landscapes, self-assembly and viruses
DJ Wales
– Journal of Theoretical Medicine
(2005)
6,
107
An ab initio study of tunneling splittings in the water trimer (7 pages)
M Takahashi, Y Watanabe, T Taketsugu, DJ Wales
– J. Chem. Phys.
(2005)
123,
044302
Novel Structural Motifs in Clusters of Dipolar Spheres: Knots, Links, and Coils
MA Miller, DJ Wales
– J. Phys. Chem. B
(2005)
109,
23109-23112
Stacked Clusters of Polycyclic Aromatic Hydrocarbon Molecules
M Rapacioli, F Calvo, F Spiegelman, C Joblin, DJ Wales
– J. Phys. Chem. A
(2005)
109,
2487-2497
Discussion
DC Clary, DJ Wales, JC Schön, PG Wolynes
– PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES
(2005)
363,
375
Lowest-energy structures of (C60)nX (X=Li+,Na+,K+,Cl−) and (C60)nYCl (Y=Li,Na,K) clusters for n⩽13
J Hernández-Rojas, J Bretón, JM Gomez Llorente, DJ Wales
– The Journal of Chemical Physics
(2004)
121,
12315
Archetypal energy landscapes: dynamical diagnosis.
F Despa, DJ Wales, RS Berry
– J Chem Phys
(2004)
122,
024103
The energy landscape as a unifying theme in molecular science
DJ Wales
– Philos Trans A Math Phys Eng Sci
(2004)
363,
357-377
Effect of salt bridges on the energy landscape of a model protein
DJ Wales, PEJ Dewsbury
– J. Chem. Phys.
(2004)
121,
10284
Analysis of cooperativity and localization for atomic rearrangements
SA Trygubenko, DJ Wales
– Journal of Chemical Physics
(2004)
121,
6689
  • <
  • 42 of 70
  • >

Research Group

Research Interest Groups

Telephone number

01223 336354

Email address

dw34@cam.ac.uk