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Yusuf Hamied Department of Chemistry

 

Professor of Chemical Physics

The self-assembly of complex mesoscopic structures, the folding of proteins, and the complicated phenomenology of glasses are all manifestations of the underlying potential energy surface (PES). In each of these fields related ideas have emerged to explain and predict chemical and physical properties in terms of the PES. In studies of clusters and glasses the PES itself is often investigated directly, whereas for proteins and other biomolecules it is also common to define free energy surfaces, as the figure below illustrates for lysozyme.

Applications of energy landscape theory in my group range from studies of tunnelling splitting patterns in small molecules to computer simulation of protein folding and misfolding, including aggregation of misfolded proteins. Other active research topics include global optimisation and investigation of how the thermodynamic and dynamic properties of glasses are related to the underlying PES.

Two recent advances are now providing new insight into larger systems. Discrete path sampling enables dynamical properties to be obtained efficiently, and is being used to calculate folding rates for proteins. Unexpected connections between dynamics and thermodynamics have also been revealed by the application of catastrophe theory to energy landscapes, and new results are now being obtained to characterize phase transitions.

Publications

Rational design of helical architectures
D Chakrabarti, SN Fejer, DJ Wales
– Proceedings of the National Academy of Sciences of the United States of America
(2009)
106,
20164
Global minima of transition metal clusters described by Finnis–Sinclair potentials: A comparison with semi-empirical molecular orbital theory
JA Elliott, Y Shibuta, DJ Wales
– Philosophical Magazine
(2009)
89,
3311
Stepwise melting of a model glass former under confinement
F Calvo, DJ Wales
– The Journal of Chemical Physics
(2009)
131,
134504
Mechanisms for H2 Reduction on the PdO{101} Surface and the Pd{100}-(√5 × √5)R27°-O Surface Oxide
M Blanco-Rey, DJ Wales, SJ Jenkins
– Journal of Physical Chemistry C
(2009)
113,
16757
Mechanisms for H2 Reduction on the PdO{101} Surface and the Pd{100}-(√5 x √5)R27°-O Surface Oxide
M Blanco-Rey, DJ Wales, SJ Jenkins
– The Journal of Physical Chemistry C
(2009)
113,
16757
The kinetics and structure of protein energy landscape
MC Prentiss, DJ Wales, PG Wolynes
– ABSTR PAP AM CHEM S
(2009)
238,
Theory of NHx ± H Reactions on Fe{211}
HL McKay, SJ Jenkins, DJ Wales
– The Journal of Physical Chemistry C
(2009)
113,
15274
Defect motifs for spherical topologies (8 pages).
DJ Wales, H McKay, EL Altschuler
– Physical Review B
(2009)
79,
224115
Calculating rate constants and committor probabilities for transition networks by graph transformation
DJ Wales
– J Chem Phys
(2009)
130,
204111
Connectivity in the potential energy landscape for binary Lennard-Jones systems.
VK de Souza, DJ Wales
– J. Chem. Phys.
(2009)
130,
194508
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Research Group

Research Interest Groups

Telephone number

01223 336354

Email address

dw34@cam.ac.uk