Professor of Chemical Physics

The self-assembly of complex mesoscopic structures, the folding of proteins, and the complicated phenomenology of glasses are all manifestations of the underlying potential energy surface (PES). In each of these fields related ideas have emerged to explain and predict chemical and physical properties in terms of the PES. In studies of clusters and glasses the PES itself is often investigated directly, whereas for proteins and other biomolecules it is also common to define free energy surfaces, as the figure below illustrates for lysozyme.

Applications of energy landscape theory in my group range from studies of tunnelling splitting patterns in small molecules to computer simulation of protein folding and misfolding, including aggregation of misfolded proteins. Other active research topics include global optimisation and investigation of how the thermodynamic and dynamic properties of glasses are related to the underlying PES.

Two recent advances are now providing new insight into larger systems. Discrete path sampling enables dynamical properties to be obtained efficiently, and is being used to calculate folding rates for proteins. Unexpected connections between dynamics and thermodynamics have also been revealed by the application of catastrophe theory to energy landscapes, and new results are now being obtained to characterize phase transitions.

Publications

Symmetrization of the AMBER and CHARMM Force Fields
E MaƂolepsza, B Strodel, M Khalili, S Trygubenko, SN Fejer, DJ Wales
Journal of computational chemistry
(2010)
31
Emergent complexity from simple anisotropic building blocks: Shells, tubes, and spirals
SN Fejer, D Chakrabarti, DJ Wales
ACS Nano
(2010)
4
Interpolation schemes for peptide rearrangements (9 pages).
MS Bauer, B Strodel, SN Fejer, EF Koslover, DJ Wales
J. Chem. Phys.
(2010)
132
Energy Landscapes: Some New Horizons
DJ Wales
Curr. Op. Struct. Biol.
(2010)
20
Rational design of helical architectures
D Chakrabarti, SN Fejer, DJ Wales
Proceedings of the National Academy of Sciences of the United States of America
(2009)
106
Global minima of transition metal clusters described by Finnis-Sinclair potentials: A comparison with semi-empirical molecular orbital theory
JA Elliott, Y Shibuta, DJ Wales
The Philosophical Magazine A Journal of Theoretical Experimental and Applied Physics
(2009)
89
Stepwise melting of a model glass former under confinement.
F Calvo, DJ Wales
Journal of Chemical Physics
(2009)
131
Molecule-doped rare gas clusters: structure and stability of ArnNO(X 2Π1/2/3/2), n ≤ 25, from new ab initio potential energy surfaces of ArNO
FY NAUMKIN, DJ WALES
Molecular Physics
(2009)
98
Rydberg excitations in rare gas clusters: structure and electronic spectra of Ar* n (3 ≤ n ≤ 25)
FY NAUMKIN, DJ WALES
Molecular Physics
(2009)
96
Molecule-doped rare gas clusters: structure and stability of ArnNO(X (2)Pi(1/2,3/2)), n <= 25, from new ab initio potential energy surfaces of ArNO
FY NAUMKIN, DJ WALES
Mol. Phys.
(2009)
98

Research Group

Research Interest Groups

Telephone number

01223 336354

Email address