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Yusuf Hamied Department of Chemistry

 

Professor of Chemical Physics

The self-assembly of complex mesoscopic structures, the folding of proteins, and the complicated phenomenology of glasses are all manifestations of the underlying potential energy surface (PES). In each of these fields related ideas have emerged to explain and predict chemical and physical properties in terms of the PES. In studies of clusters and glasses the PES itself is often investigated directly, whereas for proteins and other biomolecules it is also common to define free energy surfaces, as the figure below illustrates for lysozyme.

Applications of energy landscape theory in my group range from studies of tunnelling splitting patterns in small molecules to computer simulation of protein folding and misfolding, including aggregation of misfolded proteins. Other active research topics include global optimisation and investigation of how the thermodynamic and dynamic properties of glasses are related to the underlying PES.

Two recent advances are now providing new insight into larger systems. Discrete path sampling enables dynamical properties to be obtained efficiently, and is being used to calculate folding rates for proteins. Unexpected connections between dynamics and thermodynamics have also been revealed by the application of catastrophe theory to energy landscapes, and new results are now being obtained to characterize phase transitions.

Publications

Turning intractable counting into sampling: Computing the configurational entropy of three-dimensional jammed packings
S Martiniani, KJ Schrenk, JD Stevenson, DJ Wales, D Frenkel
– Physical review. E
(2016)
93,
012906
Grand and Semigrand Canonical Basin-Hopping.
F Calvo, D Schebarchov, DJ Wales
– J Chem Theory Comput
(2016)
12,
902
Rovibrational transitions of the methane–water dimer from intermolecular quantum dynamical computations
J Sarka, AG Császár, SC Althorpe, DJ Wales, E Mátyus
– Physical chemistry chemical physics : PCCP
(2016)
18,
22816
QTAIM and Stress Tensor Interpretation of the (H2O)5 Potential Energy Surface
T Xu, J Farrell, Y Xu, R Momen, SR Kirk, S Jenkins, DJ Wales
– JOURNAL OF COMPUTATIONAL CHEMISTRY
(2016)
37,
2712
Isotopic and tunneling patterns in water clusters
J Richardson, C Perez, Z Kisiel, B Temelso, G Shields, A Reid, D Wales, S Althorpe, L Evangelisti, S Lobsiger, B Pate
– ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY
(2016)
251,
Self-assembly of colloidal magnetic particles: energy landscapes and structural transitions.
J Hernández-Rojas, D Chakrabarti, DJ Wales
– Physical chemistry chemical physics : PCCP
(2016)
18,
26579
Coarse-graining the structure of polycyclic aromatic hydrocarbons clusters.
J Hernández-Rojas, F Calvo, DJ Wales
– Physical chemistry chemical physics : PCCP
(2016)
18,
13736
Energetically favoured defects in dense packings of particles on spherical surfaces
S Paquay, H Kusumaatmaja, DJ Wales, R Zandi, P van der Schoot
– Soft Matter
(2016)
12,
5708
Response to "comment on 'Exploring the potential energy landscape of the Thomson problem via Newton homotopies"' [J. Chem. Phys. 143, 247101 (2015)]
D Mehta, T Chen, JWR Morgan, DJ Wales
– J Chem Phys
(2015)
143,
247102
Rate constants, timescales, and free energy barriers
P Salamon, D Wales, A Segall, YA Lai, JC Schön, KH Hoffmann, B Andresen
– Journal of Non-Equilibrium Thermodynamics
(2015)
41,
13
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Research Group

Research Interest Groups

Telephone number

01223 336354

Email address

dw34@cam.ac.uk