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Professor of Chemical Physics

The self-assembly of complex mesoscopic structures, the folding of proteins, and the complicated phenomenology of glasses are all manifestations of the underlying potential energy surface (PES). In each of these fields related ideas have emerged to explain and predict chemical and physical properties in terms of the PES. In studies of clusters and glasses the PES itself is often investigated directly, whereas for proteins and other biomolecules it is also common to define free energy surfaces, as the figure below illustrates for lysozyme.

Applications of energy landscape theory in my group range from studies of tunnelling splitting patterns in small molecules to computer simulation of protein folding and misfolding, including aggregation of misfolded proteins. Other active research topics include global optimisation and investigation of how the thermodynamic and dynamic properties of glasses are related to the underlying PES.

Two recent advances are now providing new insight into larger systems. Discrete path sampling enables dynamical properties to be obtained efficiently, and is being used to calculate folding rates for proteins. Unexpected connections between dynamics and thermodynamics have also been revealed by the application of catastrophe theory to energy landscapes, and new results are now being obtained to characterize phase transitions.

Publications

GPU-Accelerated Exploration of Biomolecular Energy Landscapes
RG Mantell, CE Pitt, DJ Wales
– Journal of chemical theory and computation
(2016)
12,
6182
Structure, Thermodynamics, and Folding Pathways for a Tryptophan Zipper as a Function of Local Rigidification.
JA Joseph, CS Whittleston, DJ Wales
– Journal of Chemical Theory and Computation
(2016)
12,
6109
Coarse-Grained Simulations Complemented by Atomistic Molecular Dynamics Provide New Insights into Folding and Unfolding of Human Telomeric G-Quadruplexes
P Stadlbauer, L Mazzanti, T Cragnolini, DJ Wales, P Derreumaux, S Pasquali, J Šponer
– Journal of Chemical Theory and Computation
(2016)
12,
6077
Probing helical transitions in a DNA duplex†
DJ Wales, D Chakraborty
– Physical Chemistry Chemical Physics
(2016)
Impurity effects on solid-solid transitions in atomic clusters.
BE Husic, D Schebarchov, DJ Wales
– Nanoscale
(2016)
8,
18326
Potential energy landscapes of tetragonal pyramid molecules
Y Yoshida, H Sato, JWR Morgan, DJ Wales
– Chemical Physics Letters
(2016)
664,
5
QTAIM and stress tensor interpretation of the (H2 O)5 potential energy surface.
T Xu, J Farrell, Y Xu, R Momen, SR Kirk, S Jenkins, DJ Wales
– J Comput Chem
(2016)
37,
2712
Prediction of Sepsis in the Intensive Care Unit With Minimal Electronic Health Record Data: A Machine Learning Approach.
T Desautels, J Calvert, J Hoffman, M Jay, Y Kerem, L Shieh, D Shimabukuro, U Chettipally, MD Feldman, C Barton, DJ Wales, R Das
– JMIR Medical Informatics
(2016)
4,
e28
Preventing Structural Rearrangements on Battery Cycling: A First-Principles Investigation of the Effect of Dopants on the Migration Barriers in Layered Li0.5MnO2
ID Seymour, DJ Wales, CP Grey
– The Journal of Physical Chemistry C
(2016)
120,
19521
Structural analysis of high-dimensional basins of attraction
S Martiniani, KJ Schrenk, JD Stevenson, DJ Wales, D Frenkel
– Physical review. E
(2016)
94,
031301
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3IA Universite Cote d'Azur

Cover of Physical Chemistry Chemical Physics

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01223 336354

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