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Professor of Chemical Physics

The self-assembly of complex mesoscopic structures, the folding of proteins, and the complicated phenomenology of glasses are all manifestations of the underlying potential energy surface (PES). In each of these fields related ideas have emerged to explain and predict chemical and physical properties in terms of the PES. In studies of clusters and glasses the PES itself is often investigated directly, whereas for proteins and other biomolecules it is also common to define free energy surfaces, as the figure below illustrates for lysozyme.

Applications of energy landscape theory in my group range from studies of tunnelling splitting patterns in small molecules to computer simulation of protein folding and misfolding, including aggregation of misfolded proteins. Other active research topics include global optimisation and investigation of how the thermodynamic and dynamic properties of glasses are related to the underlying PES.

Two recent advances are now providing new insight into larger systems. Discrete path sampling enables dynamical properties to be obtained efficiently, and is being used to calculate folding rates for proteins. Unexpected connections between dynamics and thermodynamics have also been revealed by the application of catastrophe theory to energy landscapes, and new results are now being obtained to characterize phase transitions.

Publications

Morphological analysis of chiral rod clusters from a coarse-grained single-site chiral potential.
BJ Sutherland, SW Olesen, H Kusumaatmaja, JWR Morgan, DJ Wales
– Soft matter
(2019)
15,
8147
Morphological analysis of chiral rod clusters from a coarse-grained single-site chiral potential
BJ Sutherland, SW Olesen, H Kusumaatmaja, JWR Morgan, DJ Wales
(2019)
Identifying mechanistically distinct pathways in kinetic transition networks
DJ Sharpe, DJ Wales
– Journal of Chemical Physics
(2019)
151,
124101
Temperature Controls Guest Uptake and Release from Zn4L4 Tetrahedra.
D Zhang, TK Ronson, S Güryel, JD Thoburn, DJ Wales, JR Nitschke
– J Am Chem Soc
(2019)
141,
14534
The Contribution of Backbone Electrostatic Repulsion to DNA Mechanical Properties is Length-Scale-Dependent.
S Xiao, H Liang, DJ Wales
– J Phys Chem Lett
(2019)
10,
4829
Energy landscapes and dynamics of xylo-nucleic acids
DJ Sharpe, K Roeder, DJ Wales
(2019)
Go-Kit: A Tool To Enable Energy Landscape Exploration of Proteins
S Neelamraju, DJ Wales, S Gosavi
– Journal of Chemical Information and Modeling
(2019)
59,
1703
Dynamics of an adenine-adenine RNA conformational switch from discrete path sampling
D Chakraborty, DJ Wales
– The Journal of chemical physics
(2019)
150,
125101
Energy Landscapes for Proteins: From Single Funnels to Multifunctional Systems
K Röder, JA Joseph, BE Husic, DJ Wales
– Advanced Theory and Simulations
(2019)
2,
1800175
Energy Landscape for Fold-Switching in Regulatory Protein RfaH
JA Joseph, D Chakraborty, DJ Wales
– J Chem Theory Comput
(2019)
15,
731
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3IA Universite Cote d'Azur

Cover of Physical Chemistry Chemical Physics

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Research Interest Groups

Telephone number

01223 336354

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