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The Clarke Group

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  • Currently displaying 41 - 60 of 164 publications
Remarkably fast coupled folding and binding of the intrinsically disordered transactivation domain of cMyb to CBP KIX
SL Shammas, AJ Travis, J Clarke
– J Phys Chem B
(2013)
117,
13346
A mechanistic model for amorphous protein aggregation of immunoglobulin-like domains.
MB Borgia, AA Nickson, J Clarke, MJ Hounslow
– Journal of the American Chemical Society
(2013)
135,
6456
Folding and Binding of an Intrinsically Disordered Protein: Fast, but Not ‘Diffusion-Limited’
JM Rogers, A Steward, J Clarke
– Journal of the American Chemical Society
(2013)
135,
1415
Rough passage across a barrier
B Schuler, J Clarke
– Nature
(2013)
502,
632
Take home lessons from studies of related proteins
AA Nickson, BG Wensley, J Clarke
– Curr Opin Struct Biol
(2013)
23,
66
Understanding pathogenic single‐nucleotide polymorphisms in multidomain proteins – studies of isolated domains are not enough
LG Randles, GJS Dawes, BG Wensley, A Steward, AA Nickson, J Clarke
– The FEBS journal
(2013)
280,
1018
Slow, Reversible, Coupled Folding and Binding of the Spectrin Tetramerization Domain
SL Shammas, JM Rogers, SA Hill, J Clarke
– Biophys J
(2012)
103,
2203
Separating the effects of internal friction and transition state energy to explain the slow, frustrated folding of spectrin domains.
BG Wensley, LG Kwa, SL Shammas, JM Rogers, S Browning, Z Yang, J Clarke
– Proceedings of the National Academy of Sciences of the United States of America
(2012)
109,
17795
Protein folding: Adding a nucleus to guide helix docking reduces landscape roughness
BG Wensley, LG Kwa, SL Shammas, JM Rogers, J Clarke
– Journal of Molecular Biology
(2012)
423,
273
Localizing internal friction along the reaction coordinate of protein folding by combining ensemble and single-molecule fluorescence spectroscopy.
A Borgia, BG Wensley, A Soranno, D Nettels, MB Borgia, A Hoffmann, SH Pfeil, EA Lipman, J Clarke, B Schuler
– Nature communications
(2012)
3,
1195
Two immunoglobulin tandem proteins with a linking β-strand reveal unexpected differences in cooperativity and folding pathways
A Steward, Q Chen, RI Chapman, MB Borgia, JM Rogers, A Wojtala, M Wilmanns, J Clarke
– Journal of Molecular Biology
(2012)
416,
137
Staphylococcal biofilm-forming protein has a contiguous rod-like structure
DT Gruszka, JA Wojdyla, RJ Bingham, JP Turkenburg, IW Manfield, A Steward, AP Leech, JA Geoghegan, TJ Foster, J Clarke, JR Potts
– Proc Natl Acad Sci U S A
(2012)
109,
E1011
Learning from Nature to design new biomolecules
J Clarke, W Schief
– Current Opinion in Structural Biology
(2012)
22,
395
Single-molecule fluorescence reveals sequence-specific misfolding in multidomain proteins
MB Borgia, A Borgia, RB Best, A Steward, D Nettels, B Wunderlich, B Schuler, J Clarke
– Nature
(2011)
474,
662
Quantifying heterogeneity and conformational dynamics from single molecule FRET of diffusing molecules: recurrence analysis of single particles (RASP)
A Hoffmann, D Nettels, J Clark, A Borgia, SE Radford, J Clarke, B Schuler
– Physical Chemistry Chemical Physics
(2011)
13,
1857
What lessons can be learned from studying the folding of homologous proteins?
AA Nickson, J Clarke
– Methods
(2010)
52,
38
Protein engineering and design: from first principles to new technologies.
J Clarke, L Regan
– Current opinion in structural biology
(2010)
20,
480
Membrane protein folding makes the transition
PJ Booth, J Clarke
– Proceedings of the National Academy of Sciences of the United States of America
(2010)
107,
3947
Experimental evidence for a frustrated energy landscape in a three-helix-bundle protein family
BG Wensley, S Batey, FAC Bone, ZM Chan, NR Tumelty, A Steward, LG Kwa, A Borgia, J Clarke
– Nature
(2010)
463,
685
Non-native interactions are critical for mechanical strength in PKD domains.
JR Forman, ZT Yew, S Qamar, RN Sandford, E Paci, J Clarke
– Structure
(2009)
17,
1582