Department of Chemistry

portrait of Professor Shankar Balasubramanian FMedSci FRS

Professor Shankar Balasubramanian FMedSci FRS

Trinity College

Groups: Balasubramanian group website

Telephone: 01223 336347

E-mail: sb10031@cam.ac.uk


General


Nucleic acids are fundamental to life. Our research is focused on the chemical biology of nucleic acids, and employs the principles of chemistry and the molecular sciences to address questions of importance in biology and medicine. Projects are inherently interdisciplinary and will provide scope for a diversity of intellectual and experimental approaches that include: organic synthesis, biophysics, molecular and cellular biology and genomics. Our scientific goals are problem-driven, which constantly raises the need to invent new methodology.

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

A major interest is to elucidate and manipulate mechanisms that control the expression of genes (either transcription, or translation). We are particularly interested in the role of non-canonical nucleic acid structures that control gene expression (e.g. G-quadruplexes, micro RNA and RNA structures in the 5' untranslated regions of mRNAs). Our goal is to design and synthesise small organic molecules that target such structures and alter the expression of certain genes of interest. Such small molecule gene regulators are valuable tools to study mechanisms in biology and will also open up new approaches for therapeutics and molecular medicine, particularly for diseases characterized by aberrant expression of certain genes (e.g. various cancers).

Our fundamental science will inevitably create opportunities for translation and commercialisation. One such example was our invention (with Professor David Klenerman) of new DNA sequencing technology ("Solexa sequencing") that was commercialised as a Cambridge University spinout company (now part of Illumina Inc.) and is used routinely for applications in genomics, including human genome sequencing. 

To hear Shankar Balasubramanian discuss some of the group's research click here:

 http://www.sms.cam.ac.uk/media/1111642 

Publications

Targeting nucleic acid secondary structures with polyamides using an optimized dynamic combinatorial approach
S Ladame, AM Whitney, S Balasubramanian - Angew Chem Int Ed Engl (2005) 44, 5736
(DOI: 10.1002/anie.200501450)
Putative DNA quadruplex formation within the human c-kit oncogene.
S Rankin, AP Reszka, J Huppert, M Zloh, GN Parkinson, AK Todd, S Ladame, S Balasubramanian, S Neidle - Journal of the American Chemical Society (2005) 127, 10584
(DOI: 10.1021/ja050823u)
Dynamic covalent chemistry on self-templating PNA oligomers: Formation of a bimolecular PNA quadruplex
Y Krishnan-Ghosh, AM Whitney, S Balasubramanian - Chemical Communications (2005), 3068
(DOI: 10.1039/b503578c)
Solid-phase methods for the synthesis of cyanine dyes
SJ Mason, JL Hake, J Nairne, WJ Cummins, S Balasubramanian - J Org Chem (2005) 70, 2939
(DOI: 10.1021/jo0479415)
Prevalence of quadruplexes in the human genome
JL Huppert, S Balasubramanian - Nucleic Acids Research (2005) 33, 2908
(DOI: 10.1093/nar/gki609)
Loop-length-dependent folding of G-quadruplexes
P Hazel, J Huppert, S Balasubramanian, S Neidle - Journal of the American Chemical Society (2004) 126, 16405
(DOI: 10.1021/ja045154j)
Individual molecules of dye-labeled DNA act as a reversible two-color switch upon application of an electric field
SS White, LM Ying, S Balasubramanian, D Klenerman - Angew Chem Int Ed Engl (2004) 43, 5926
(DOI: 10.1002/anie.200460323)
Inhibition of human telomerase activity by an engineered zinc finger protein that binds G-quadruplexes.
SD Patel, M Isalan, G Gavory, S Ladame, Y Choo, S Balasubramanian - Biochemistry (2004) 43, 13452
(DOI: 10.1021/bi048892t)
Tetrapeptides induce selective recognition for G-quadruplexes when conjugated to a DNA-binding platform
S Ladame, JA Schouten, J Stuart, J Roldan, S Neidle, S Balasubramanian - Organic and Biomolecular Chemistry (2004) 2, 2925
(DOI: 10.1039/b409698c)
Measuring single-molecule nucleic acid dynamics in solution by two-color filtered ratiometric fluorescence correlation spectroscopy
HT Li, XJ Ren, LM Ying, S Balasubramanian, D Klenerman - Proceedings of the National Academy of Sciences of the United States of America (2004) 101, 14425
(DOI: 10.1073/pnas.0404295101)

 

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