Department of Chemistry

portrait of Professor Shankar Balasubramanian FMedSci FRS

Professor Shankar Balasubramanian FMedSci FRS

Trinity College

Groups: Balasubramanian group website

Telephone: 01223 336347

E-mail: sb10031@cam.ac.uk


General


Nucleic acids are fundamental to life. Our research is focused on the chemical biology of nucleic acids, and employs the principles of chemistry and the molecular sciences to address questions of importance in biology and medicine. Projects are inherently interdisciplinary and will provide scope for a diversity of intellectual and experimental approaches that include: organic synthesis, biophysics, molecular and cellular biology and genomics. Our scientific goals are problem-driven, which constantly raises the need to invent new methodology.

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

A major interest is to elucidate and manipulate mechanisms that control the expression of genes (either transcription, or translation). We are particularly interested in the role of non-canonical nucleic acid structures that control gene expression (e.g. G-quadruplexes, micro RNA and RNA structures in the 5' untranslated regions of mRNAs). Our goal is to design and synthesise small organic molecules that target such structures and alter the expression of certain genes of interest. Such small molecule gene regulators are valuable tools to study mechanisms in biology and will also open up new approaches for therapeutics and molecular medicine, particularly for diseases characterized by aberrant expression of certain genes (e.g. various cancers).

Our fundamental science will inevitably create opportunities for translation and commercialisation. One such example was our invention (with Professor David Klenerman) of new DNA sequencing technology ("Solexa sequencing") that was commercialised as a Cambridge University spinout company (now part of Illumina Inc.) and is used routinely for applications in genomics, including human genome sequencing. 

To hear Shankar Balasubramanian discuss some of the group's research click here:

 http://www.sms.cam.ac.uk/media/1111642 

Publications

A small molecule that disrupts G-quadruplex DNA structure and enhances gene expression.
ZAE Waller, SA Sewitz, STD Hsu, S Balasubramanian - Journal of the American Chemical Society (2009) 131, 12628
(DOI: 10.1021/ja901892u)
G-quadruplex nucleic acids as therapeutic targets
S Balasubramanian, S Neidle - Curr Opin Chem Biol (2009) 13, 345
(DOI: 10.1016/j.cbpa.2009.04.637)
Recognition and discrimination of DNA quadruplexes by acridine-peptide conjugates.
JE Redman, JM Granadino-Roldan, JA Schouten, S Ladame, AP Reszka, S Neidle, S Balasubramanian - Organic and Biomolecular Chemistry (2009) 7, 76
(DOI: 10.1039/b814682a)
Controlled-folding of a small molecule modulates DNA G-quadruplex recognition.
S Muller, GD Pantos, R Rodriguez, S Balasubramanian - Chemical Communications (2009), 80
(DOI: 10.1039/b816861j)
FANCJ is a structure-specific DNA helicase associated with the maintenance of genomic G/C tracts
TBC London, LJ Barber, G Mosedale, GP Kelly, S Balasubramanian, ID Hickson, SJ Boulton, K Hiom - J Biol Chem (2008) 283, 36132
(DOI: 10.1074/jbc.M808152200)
Position and Stability Are Determining Factors for Translation Repression by an RNA G-Quadruplex-Forming Sequence within the 5 ' UTR of the NRAS Proto-oncogene
S Kumari, A Bugaut, S Balasubramanian - Biochemistry (2008) 47, 12664
(DOI: 10.1021/bi8010797)
Diarylethynyl Amides That Recognize the Parallel Conformation of Genomic Promoter DNA G-Quadruplexes
J Dash, PS Shirude, STD Hsu, S Balasubramanian - Journal of the American Chemical Society (2008) 130, 15950
(DOI: 10.1021/ja8046552)
A Novel Small Molecule That Alters Shelterin Integrity and Triggers a DNA-Damage Response at Telomeres
R Rodriguez, S Muller, JA Yeoman, C Trentesaux, JF Riou, S Balasubramanian - J Am Chem Soc (2008) 130, 15758
(DOI: 10.1021/ja805615w)
Accurate whole human genome sequencing using reversible terminator chemistry
DR Bentley, S Balasubramanian, HP Swerdlow, GP Smith, J Milton, CG Brown, KP Hall, DJ Evers, CL Barnes, HR Bignell, JM Boutell, J Bryant, RJ Carter, RK Cheetham, AJ Cox, DJ Ellis, MR Flatbush, NA Gormley, SJ Humphray, LJ Irving, MS Karbelashvili, SM Kirk, H Li, XH Liu, KS Maisinger, LJ Murray, B Obradovic, T Ost, ML Parkinson, MR Pratt, IMJ Rasolonjatovo, MT Reed, R Rigatti, C Rodighiero, MT Ross, A Sabot, SV Sankar, A Scally, GP Schroth, ME Smith, VP Smith, A Spiridou, PE Torrance, SS Tzonev, EH Vermaas, K Walter, XL Wu, L Zhang, MD Alam, C Anastasi, IC Aniebo, DMD Bailey, IR Bancarz, S Banerjee, SG Barbour, PA Baybayan, VA Benoit, KF Benson, C Bevis, PJ Black, A Boodhun, JS Brennan, JA Bridgham, RC Brown, AA Brown, DH Buermann, AA Bundu, JC Burrows, NP Carter, N Castillo, MCE Catenazzi, S Chang, RN Cooley, NR Crake, OO Dada, KD Diakoumakos, B Dominguez-Fernandez, DJ Earnshaw, UC Egbujor, DW Elmore, SS Etchin, MR Ewan, M Fedurco, LJ Fraser, KVF Fajardo, WS Furey, D George, KJ Gietzen, CP Goddard, GS Golda, PA Granieri, DE Green, DL Gustafson, NF Hansen, K Harnish, CD Haudenschild, NI Heyer, MM Hims, JT Ho, AM Horgan, K Hoschler, S Hurwitz, DV Ivanov, MQ Johnson, T James, TAH Jones, GD Kang, TH Kerelska, AD Kersey, I Khrebtukova, AP Kindwall, Z Kingsbury, PI Kokko-Gonzales, A Kumar, MA Laurent, CT Lawley, SE Lee, X Lee, AK Liao, JA Loch, M Lok, SJ Luo, RM Mammen, JW Martin, PG McCauley, P McNitt, P Mehta, KW Moon, JW Mullens, T Newington, ZM Ning, BL Ng, SM Novo, MJ O'Neill, MA Osborne, A Osnowski, O Ostadan, LL Paraschos, L Pickering, AC Pike, AC Pike, DC Pinkard, DP Pliskin, J Podhasky, VJ Quijano, C Raczy, VH Rae, SR Rawlings, AC Rodriguez, PM Roe, J Rogers, MCR Bacigalupo, N Romanov, A Romieu, RK Roth, NJ Rourke, ST Ruediger, E Rusman, RM Sanches-Kuiper, MR Schenker, JM Seoane, RJ Shaw, MK Shiver, SW Short, NL Sizto, JP Sluis, MA Smith, JES Sohna, EJ Spence, K Stevens, N Sutton, L Szajkowski, CL Tregidgo, G Turcatti, S vandeVondele, Y Verhovsky, SM Virk, S Wakelin, GC Walcott, JW Wang, GJ Worsley, JY Yan, L Yau, M Zuerlein, J Rogers, JC Mullikin, ME Hurles, NJ McCooke, JS West, FL Oaks, PL Lundberg, D Klenerman, R Durbin, AJ Smith - Nature (2008) 456, 53
(DOI: 10.1038/nature07517)
G-quadruplexes: the beginning and end of UTRs
JL Huppert, A Bugaut, S Kumari, S Balasubramanian - Nucleic Acids Research (2008) 36, 6260
(DOI: 10.1093/nar/gkn511)

 

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