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Yusuf Hamied Department of Chemistry

 

Herchel Smith Professor of Medicinal Chemistry

Nucleic acids are fundamental to life. Our research is focused on the chemical biology of nucleic acids, and employs the principles of chemistry and the molecular sciences to address questions of importance in biology and medicine. Projects are inherently interdisciplinary and will provide scope for a diversity of intellectual and experimental approaches that include: organic synthesis, biophysics, molecular and cellular biology and genomics. Our scientific goals are problem-driven, which constantly raises the need to invent new methodology.

 

A major interest is to elucidate and manipulate mechanisms that control the expression of genes (either transcription, or translation). We are particularly interested in the role of non-canonical nucleic acid structures that control gene expression (e.g. G-quadruplexes, micro RNA and RNA structures in the 5' untranslated regions of mRNAs). Our goal is to design and synthesise small organic molecules that target such structures and alter the expression of certain genes of interest. Such small molecule gene regulators are valuable tools to study mechanisms in biology and will also open up new approaches for therapeutics and molecular medicine, particularly for diseases characterized by aberrant expression of certain genes (e.g. various cancers).

Our fundamental science will inevitably create opportunities for translation and commercialisation. One such example was our invention (with Professor David Klenerman) of new DNA sequencing technology ("Solexa sequencing") that was commercialised as a Cambridge University spinout company (now part of Illumina Inc.) and is used routinely for applications in genomics, including human genome sequencing. 

Hear Shankar Balasubramanian discuss some of the group's research.

Watch Professor Balasubramanian discuss his research

Take a tour of the Balasubramanian Lab

Publications

Publisher Correction: DNA sequencing at 40: past, present and future
J Shendure, S Balasubramanian, GM Church, W Gilbert, J Rogers, JA Schloss, RH Waterston
– Nature
(2019)
568,
e11
Detection, Structure and Function of Modified DNA Bases
A Hofer, ZJ Liu, S Balasubramanian
– J Am Chem Soc
(2019)
141,
6420
Whole genome experimental maps of DNA G-quadruplexes in multiple species
G Marsico, VS Chambers, AB Sahakyan, P McCauley, JM Boutell, MD Antonio, S Balasubramanian
– Nucleic Acids Research
(2019)
47,
gkz179-
Opto-epigenetic modulation of DNA methylation with a photo-responsive small-molecule approach
S Mao, H Nguyen, S Stewart, M Kukwikila, S Jones, D Offenbartl-Stiegert, S Beck, S Howorka, S Balasubramanian
– Angew Chem Int Ed Engl
(2019)
58,
6620
RNA G-quadruplexes at upstream open reading frames cause DHX36- and DHX9-dependent translation of human mRNAs (vol 19, 229, 2018)
P Murat, G Marsico, B Herdy, AT Ghanbarian, G Portella, S Balasubramanian
– Genome biology
(2019)
20,
11
RNA G-quadruplexes at upstream open reading frames cause DHX36-and DHX9-dependent translation of human mRNAs
P Murat, G Marsico, B Herdy, AT Ghanbarian, G Portella, S Balasubramanian
– Genome biology
(2018)
19,
229
Structure of a (3+1) hybrid G-quadruplex in the PARP1 promoter
A Sengar, JJ Vandana, VS Chambers, M Di Antonio, FR Winnerdy, S Balasubramanian, AT Phan
– Nucleic Acids Res
(2018)
47,
1564
5-Formylcytosine organizes nucleosomes and forms Schiff base interactions with histones in mouse embryonic stem cells.
E-A Raiber, G Portella, S Martínez Cuesta, R Hardisty, P Murat, Z Li, M Iurlaro, W Dean, J Spindel, D Beraldi, Z Liu, MA Dawson, W Reik, S Balasubramanian
– Nature Chemistry
(2018)
10,
1258
DNA G-quadruplex structures mold the DNA methylome.
S Balasubramanian, S Mao, A Ghanbarian, J Spiegel, S Martinez Cuesta, D Beraldi, M Di Antonio, R Hansel-Hertsch, D Tannahill
– Nature Structural & Molecular Biology
(2018)
25,
951
Analysis of NRAS RNA G-quadruplex binding proteins reveals DDX3X as a novel interactor of cellular G-quadruplex containing transcripts.
B Herdy, C Mayer, D Varshney, G Marsico, P Murat, C Taylor, C D'Santos, D Tannahill, S Balasubramanian
– Nucleic Acids Research
(2018)
46,
11592
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Research Group

Research Interest Group

Telephone number

01223 336347

Email address

sb10031@cam.ac.uk