Department of Chemistry

portrait of Professor Shankar Balasubramanian FMedSci FRS

Professor Shankar Balasubramanian FMedSci FRS

Trinity College

Groups: Balasubramanian group website

Telephone: 01223 336347

E-mail: sb10031@cam.ac.uk


General


Nucleic acids are fundamental to life. Our research is focused on the chemical biology of nucleic acids, and employs the principles of chemistry and the molecular sciences to address questions of importance in biology and medicine. Projects are inherently interdisciplinary and will provide scope for a diversity of intellectual and experimental approaches that include: organic synthesis, biophysics, molecular and cellular biology and genomics. Our scientific goals are problem-driven, which constantly raises the need to invent new methodology.

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

A major interest is to elucidate and manipulate mechanisms that control the expression of genes (either transcription, or translation). We are particularly interested in the role of non-canonical nucleic acid structures that control gene expression (e.g. G-quadruplexes, micro RNA and RNA structures in the 5' untranslated regions of mRNAs). Our goal is to design and synthesise small organic molecules that target such structures and alter the expression of certain genes of interest. Such small molecule gene regulators are valuable tools to study mechanisms in biology and will also open up new approaches for therapeutics and molecular medicine, particularly for diseases characterized by aberrant expression of certain genes (e.g. various cancers).

Our fundamental science will inevitably create opportunities for translation and commercialisation. One such example was our invention (with Professor David Klenerman) of new DNA sequencing technology ("Solexa sequencing") that was commercialised as a Cambridge University spinout company (now part of Illumina Inc.) and is used routinely for applications in genomics, including human genome sequencing. 

To hear Shankar Balasubramanian discuss some of the group's research click here:

 http://www.sms.cam.ac.uk/media/1111642 

Publications

Studies on the chemical stability and functional group compatibility of the benzoin photolabile safety-catch linker using an analytical construct
M Cano, M Ladlow, S Balasubramanian - Journal of Combinatorial Chemistry (2002) 4, 44
(DOI: 10.1021/cc010040e)
Non-Arrhenius kinetics for the loop closure of a DNA hairpin
MI Wallace, LM Ying, S Balasubramanian, D Klenerman - Proceedings of the National Academy of Sciences of the United States of America (2001) 98, 5584
(DOI: 10.1073/pnas.101523498)
Probing DNA surface attachment and local environment using single molecule spectroscopy
MA Osborne, CL Barnes, S Balasubramanian, D Klenerman - The Journal of Physical Chemistry B (2001) 105, 3120
(DOI: 10.1021/jp0038660)
Selection of zinc fingers that bind single-stranded telomeric DNA in the G-quadruplex conformation
M Isalan, SD Patel, S Balasubramanian, Y Choo - Biochemistry (2001) 40, 830
(DOI: 10.1021/bi001728v)
Exploring a benzyloxyaniline linker utilizing ceric ammonium nitrate (CAN) as a cleavage reagent: solid-phase synthesis of N-unsubstituted beta-lactams and secondary amides.
KH Gordon, S Balasubramanian - Organic Letters (2001) 3, 53
(DOI: 10.1021/ol006766l)
Solid phase chemical technologies for combinatorial chemistry.
S Balasubramanian - Journal of cellular biochemistry. Supplement (2001) Suppl 37, 28
FRET fluctuation spectroscopy: Exploring the conformational dynamics of a DNA hairpin loop
MI Wallace, LM Ying, S Balasubramanian, D Klenerman - The Journal of Physical Chemistry B (2000) 104, 11551
(DOI: 10.1021/jp001560n)
The science of chemical discovery: probing the unknown with new technologies
S Balasubramanian - Drug Discov Today (2000) 5, 533
(DOI: 10.1016/S1359-6446(00)01582-8)
A stereoselective synthesis of 1,3,4-substituted beta-lactams from polymer-supported chiral oxazolidine aldehyde
K Gordon, M Bolger, N Khan, S Balasubramanian - Tetrahedron Letters (2000) 41, 8621
(DOI: 10.1016/S0040-4039(00)01516-1)
Strategies for the synthesis of fluorescently labelled PNA.
XH Liu, S Balasubramanian - Tetrahedron Letters (2000) 41, 6153
(DOI: 10.1016/S0040-4039(00)00996-5)

 

Research Interests


Teaching


Personal


Funding