Department of Chemistry

portrait of Professor Shankar Balasubramanian FMedSci FRS

Professor Shankar Balasubramanian FMedSci FRS

Trinity College

Groups: Balasubramanian group website

Telephone: 01223 336347

E-mail: sb10031@cam.ac.uk


General


Nucleic acids are fundamental to life. Our research is focused on the chemical biology of nucleic acids, and employs the principles of chemistry and the molecular sciences to address questions of importance in biology and medicine. Projects are inherently interdisciplinary and will provide scope for a diversity of intellectual and experimental approaches that include: organic synthesis, biophysics, molecular and cellular biology and genomics. Our scientific goals are problem-driven, which constantly raises the need to invent new methodology.

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

A major interest is to elucidate and manipulate mechanisms that control the expression of genes (either transcription, or translation). We are particularly interested in the role of non-canonical nucleic acid structures that control gene expression (e.g. G-quadruplexes, micro RNA and RNA structures in the 5' untranslated regions of mRNAs). Our goal is to design and synthesise small organic molecules that target such structures and alter the expression of certain genes of interest. Such small molecule gene regulators are valuable tools to study mechanisms in biology and will also open up new approaches for therapeutics and molecular medicine, particularly for diseases characterized by aberrant expression of certain genes (e.g. various cancers).

Our fundamental science will inevitably create opportunities for translation and commercialisation. One such example was our invention (with Professor David Klenerman) of new DNA sequencing technology ("Solexa sequencing") that was commercialised as a Cambridge University spinout company (now part of Illumina Inc.) and is used routinely for applications in genomics, including human genome sequencing. 

To hear Shankar Balasubramanian discuss some of the group's research click here:

 http://www.sms.cam.ac.uk/media/1111642 

Publications

Recent developments in linker design and application.
AJ Wills, S Balasubramanian - Curr Opin Chem Biol (2003) 7, 346
(DOI: 10.1016/S1367-5931(03)00035-8)
Dynamic covalent chemistry on self-templating peptides: Formation of a disulfide-linked beta-hairpin mimic
Y Krishnan-Ghosh, S Balasubramanian - Angew Chem Int Ed Engl (2003) 42, 2171
(DOI: 10.1002/anie.200250551)
G-quadruplex-specific peptide-hemicyanine ligands by partial combinatorial selection.
JA Schouten, S Ladame, SJ Mason, MA Cooper, S Balasubramanian - Journal of the American Chemical Society (2003) 125, 5594
(DOI: 10.1021/ja029356w)
Kinetics of unfolding the human telomeric DNA quadruplex using a PNA trap
JJ Green, LM Ying, D Klenerman, S Balasubramanian - Journal of the American Chemical Society (2003) 125, 3763
(DOI: 10.1021/ja029149w)
Ultrasensitive coincidence fluorescence detection of single DNA molecules.
HT Li, LM Ying, JJ Green, S Balasubramanian, D Klenerman - Analytical Chemistry (2003) 75, 1664
(DOI: 10.1021/ac026367z)
Site-specific cleavage of human telomerase RNA using PNA-neocuproine center dot Zn(II) derivatives
A Whitney, G Gavory, S Balasubramanian - Chemical Communications (2003) 9, 36
(DOI: 10.1039/b210135a)
PNA and oligonucleotide inhibitors of human telomerase
S Balasubramanian, G Gavory - (2003), 100
Solid-phase catch, activate, and release synthesis of cyanine dyes.
SJ Mason, S Balasubramanian - Organic Letters (2002) 4, 4261
(DOI: 10.1021/ol026836j)
Minimum length requirement of the alignment domain of human telomerase RNA to sustain catalytic activity in vitro
G Gavory, M Farrow, S Balasubramanian - Nucleic Acids Research (2002) 30, 4470
(DOI: 10.1093/nar/gkf575)
Synthesis of a polymer-supported oxazolidine aldehyde for asymmetric chemistry
AJ Wills, Y Krishnan-Ghosh, S Balasubramanian - J Org Chem (2002) 67, 6646
(DOI: 10.1021/jo0203239)

 

Research Interests


Teaching


Personal


Funding