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Dr Nitin Sharma

Current Position:

Working as research associate under Andreas Bender from Jan 2015 in an academia-industry collaborative project between Aboca, Italy and Department of Chemistry, University of Cambridge. I am involved in investigating the mode of biological action of various phytocomplexes by computational integrating of biological and chemical data. I specialise in Systems Chemical Biology, Chemoinformatics, Bioinformatics and Drug Discovery.

Skills:

Computational Chemistry: Molecular Dynamics, QM/MM, QSAR and Docking

Structural Bioinformatics:  Protein Structure Prediction, Multiple Sequence-Alignment, Homology Modeling

Systems Polypharmacology: Analysis of Mechanism of action by Integrating Differentially Expressed genes (RNA-Seq) and chemical structures

Scientific Programming: PERL, R, Python

Software and Packages: Ingenuity Pathway Analysis (IPA), Cytoscape, KNIME, Pipeline Pilot, SYBYL, MOE, Discovery Studio, AMBER12, Schrodinger Canvas

 

LinkedIn: https://uk.linkedin.com/in/imsharmanitin

Publications

PaDEL-DDPredictor: open-source software for PD-PK-T prediction.
Y He, CY Liew, N Sharma, SK Woo, YT Chau, CW Yap
– Journal of computational chemistry
(2013)
34,
604
Consensus QSAR model for identifying novel H5N1 inhibitors.
N Sharma, CW Yap
– Mol Divers
(2012)
16,
513

Research Group

Telephone number

01223 336432

Email address

ns636@cam.ac.uk